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sanger-tol / variantcalling

Nextflow DSL2 pipeline to call variants on long read alignment.
https://pipelines.tol.sanger.ac.uk/variantcalling
MIT License
3 stars 2 forks source link

Assess nf-core/phylonetwork #83

Closed muffato closed 2 months ago

muffato commented 5 months ago

nf-core/phylonetwork is a very new initiative for inferring phylogenetic networks from whole genomes, performing local ancestry analysis, and maybe some downstream tests of functional enrichment etc associated with admixed regions – which sounds very relevant for some population genomics studies !

The workflow diagram is on the Slack discussion (it would accept VCFs as input !) and a Slack channel was created this afternoon.

We should take a look at this once we're done with #80.

muffato commented 2 months ago

Currently there is no planned overlap with what we wanted to do. Since we know members of the phylonetwork development team, we can make sure that there is no duplication of effort.