GPL-925-1 Further RNA plate barcode & plate map file name formats required by 2nd April [Heron]

User story GPL-925 | As representative for LH labs (Alan K) I would like to accept covid samples from MK, Glasgow and AP that have further plate barcode changes by 2nd April

Who are the primary contacts for this story Alan K (PAM)

Acceptance criteria To be considered successful the solution must allow:

For MK

[x] RNA CP plate barcode for MK: cpRNANNNNNN eg cpRNA123456
[x] With corresponding change to the plate map filename, cpRNA123456.csv
[x] RNA Eagle plate barcode for MK: EMKNNNNNN eg EMK123456 (NB may have been changed previously)

For AP:

[x] RNA CP plate barcode for AP: XX-XXX-NNNNNNNN eg AP-chp-12345678
[x] With corresponding change to the plate map filename, AP-chp-12345678.csv

For Glasgow:

[x] RNA CP plate barcode for Glasgow: GLS-GP-NNNNNN eg GLS-GP-123456
[x] With corresponding change to the plate map filename, GLS-GP-123456.csv

New barcode formats added to SS, class with regex, valid foreign barcodes (for Sentinel only directly in SS) Updates to accepted file names in Crawler

Dependencies

Additional context Alan K wrote (Tuesday, 23 March 2021 at 12:19)

... We have just been made aware of some further change being implemented at the Lighthouses. I’ve copied updated tables for file names and barcode formats below and highlighted the changes. Note: feel free to ignore Brant’s Bridge in this request as I’ll need to send all new LH data through. I thought I’d include in case it is easier to do these items as batches. ...

Lighthouse	Unconsolidated plate barcode format	Unconsolidated plate barcode example	CP plate barcode format	CP plate barcode example	Eagle Barcode Format	Eagle Barcode Example
Milton Keynes	XXXNNNNNN	RNA123456	cpRNANNNNNN	cpRNA123456	XXXNNNNNN	EMK123456
Alderley Park	XX-XXX-NNNNNNNN	AP-rna-12345678	XX-XXX-NNNNNNNN	AP-rna-00210235, AP-chp-12345678	XXXNNNNNN	APE123456
Glasgow	XXXNNNNNNX	GLA123456R	GLS-GP-NNNNNN	GLS-GP-123456	XXXNNNNNN	EGG123456GLS123456
Cambridge	NNNNNNNNN	123456789	NNNNNNNNN	002220450	XXXNNNNNN	EGC123456CBE123456
Randox	XXX-AA-NNNNNNNN	RDX-J1-123456	XXX-AA-NNNNNNNN	RDX-J1-123456	XXXNNNNNN	RXE123456
Brant's Bridge	NNNNNNNNNNNNNNNNN	95040456000420484

Lighthouse	Surveillance Plate Map file names	Eagle Plate Map file names	Unconsolidated Plate map file names
Milton Keynes	RNA123456, cpRNA123456	EGL123456	MK_sanger_report_210315_0800
Alderley Park	AP-rna-12345678, AP-chp-12345678	APE123456	AP_sanger_report_210315_0130
Glasgow	GLA123456R, GLS-GP-123456	EGG123456GLS123456	GLS_sanger_report_210315_0500
Cambridge	123456789	EGC123456CBE123456	CB_sanger_report_210315_0126
Randox	RDX-J1-123456	RXE123456	lw-randox-box-55-18869
Brant's Bridge

sanger / crawler

GPL-925-1 Further RNA plate barcode & plate map file name formats required by 2nd April [Heron] #295