Gatekeeper is used to track the production and validation of batches of tag plates for sequencing. It is designed to interface with the Sequencescape LIMS.
🚨 Your current dependencies have known security vulnerabilities 🚨
This dependency update fixes known security vulnerabilities. Please see the details below and assess their impact carefully. We recommend to merge and deploy this as soon as possible!
Here is everything you need to know about this upgrade. Please take a good look at what changed and the test results before merging this pull request.
There is a possible XSS vulnerability when using the translation helpers
(translate, t, etc) in Action Controller. This vulnerability has been
assigned the CVE identifier CVE-2024-26143.
Applications using translation methods like translate, or t on a
controller, with a key ending in "_html", a :default key which contains
untrusted user input, and the resulting string is used in a view, may be
susceptible to an XSS vulnerability.
For example, impacted code will look something like this:
classArticlesController < ApplicationControllerdefshow@message=t("message_html",default: untrusted_input)# The `show` template displays the contents of `@message`endend
To reiterate the pre-conditions, applications must:
Use a translation function from a controller (i.e. not I18n.t, or t from
a view)
Use a key that ends in _html
Use a default value where the default value is untrusted and unescaped input
Send the text to the victim (whether that's part of a template, or a render call)
All users running an affected release should either upgrade or use one of the
workarounds immediately.
Releases
The fixed releases are available at the normal locations.
Workarounds
There are no feasible workarounds for this issue.
Patches
To aid users who aren't able to upgrade immediately we have provided patches for
the two supported release series. They are in git-am format and consist of a
single changeset.
Permissions-Policy is Only Served on HTML Content-Type
The application configurable Permissions-Policy is only served on responses
with an HTML related Content-Type.
This has been assigned the CVE identifier CVE-2024-28103.
Versions Affected: >= 6.1.0
Not affected: < 6.1.0
Fixed Versions: 6.1.7.8, 7.0.8.4, and 7.1.3.4
Impact
Responses with a non-HTML Content-Type are not serving the configured Permissions-Policy. There are certain non-HTML Content-Types that would benefit from having the Permissions-Policy enforced.
Releases
The fixed releases are available at the normal locations.
Workarounds
N/A
Patches
To aid users who aren't able to upgrade immediately we have provided patches for
the supported release series in accordance with our maintenance policy
regarding security issues. They are in git-am format and consist of a
single changeset.
6-1-include-permissions-policy-header-on-non-html.patch - Patch for 6.1 series
7-0-include-permissions-policy-header-on-non-html.patch - Patch for 7.0 series
7-1-include-permissions-policy-header-on-non-html.patch - Patch for 7.1 series
There is a possible XSS vulnerability when using the translation helpers
(translate, t, etc) in Action Controller. This vulnerability has been
assigned the CVE identifier CVE-2024-26143.
Applications using translation methods like translate, or t on a
controller, with a key ending in "_html", a :default key which contains
untrusted user input, and the resulting string is used in a view, may be
susceptible to an XSS vulnerability.
For example, impacted code will look something like this:
classArticlesController < ApplicationControllerdefshow@message=t("message_html",default: untrusted_input)# The `show` template displays the contents of `@message`endend
To reiterate the pre-conditions, applications must:
Use a translation function from a controller (i.e. not I18n.t, or t from
a view)
Use a key that ends in _html
Use a default value where the default value is untrusted and unescaped input
Send the text to the victim (whether that's part of a template, or a render call)
All users running an affected release should either upgrade or use one of the
workarounds immediately.
Releases
The fixed releases are available at the normal locations.
Workarounds
There are no feasible workarounds for this issue.
Patches
To aid users who aren't able to upgrade immediately we have provided patches for
the two supported release series. They are in git-am format and consist of a
single changeset.
The redirect_to method in Rails allows provided values to contain characters which are not legal in an HTTP header value. This results in the potential for downstream services which enforce RFC compliance on HTTP response headers to remove the assigned Location header. This vulnerability has been assigned the CVE identifier CVE-2023-28362.
Versions Affected: All. Not affected: None Fixed Versions: 7.0.5.1, 6.1.7.4
Impact
This introduces the potential for a Cross-site-scripting (XSS) payload to be delivered on the now static redirection page. Note that this both requires user interaction and for a Rails app to be configured to allow redirects to external hosts (defaults to false in Rails >= 7.0.x).
Releases
The FIXED releases are available at the normal locations.
Workarounds
Avoid providing user supplied URLs with arbitrary schemes to the redirect_to method.
There is a possible regular expression based DoS vulnerability in Action Dispatch. This vulnerability has been assigned the CVE identifier CVE-2023-22792.
Specially crafted cookies, in combination with a specially crafted X_FORWARDED_HOST header can cause the regular expression engine to enter a state of catastrophic backtracking. This can cause the process to use large amounts of CPU and memory, leading to a possible DoS vulnerability All users running an affected release should either upgrade or use one of the workarounds immediately.
Releases
The FIXED releases are available at the normal locations.
Workarounds
We recommend that all users upgrade to one of the FIXED versions. In the meantime, users can mitigate this vulnerability by using a load balancer or other device to filter out malicious X_FORWARDED_HOST headers before they reach the application.
Patches
To aid users who aren’t able to upgrade immediately we have provided patches for the two supported release series. They are in git-am format and consist of a single changeset.
6-1-Use-string-split-instead-of-regex-for-domain-parts.patch - Patch for 6.1 series
7-0-Use-string-split-instead-of-regex-for-domain-parts.patch - Patch for 7.0 series
Please note that only the 7.0.Z and 6.1.Z series are supported at present, and 6.0.Z for severe vulnerabilities. Users of earlier unsupported releases are advised to upgrade as soon as possible as we cannot guarantee the continued availability of security fixes for unsupported releases.
There is a possible regular expression based DoS vulnerability in Action Dispatch related to the If-None-Match header. This vulnerability has been assigned the CVE identifier CVE-2023-22795.
Versions Affected: All Not affected: None Fixed Versions: 5.2.8.15 (Rails LTS), 6.1.7.1, 7.0.4.1
Impact
A specially crafted HTTP If-None-Match header can cause the regular expression engine to enter a state of catastrophic backtracking, when on a version of Ruby below 3.2.0. This can cause the process to use large amounts of CPU and memory, leading to a possible DoS vulnerability All users running an affected release should either upgrade or use one of the workarounds immediately.
Releases
The FIXED releases are available at the normal locations.
Workarounds
We recommend that all users upgrade to one of the FIXED versions. In the meantime, users can mitigate this vulnerability by using a load balancer or other device to filter out malicious If-None-Match headers before they reach the application.
Users on Ruby 3.2.0 or greater are not affected by this vulnerability.
Patches
To aid users who aren’t able to upgrade immediately we have provided patches for the two supported release series. They are in git-am format and consist of a single changeset.
6-1-Avoid-regex-backtracking-on-If-None-Match-header.patch - Patch for 6.1 series
7-0-Avoid-regex-backtracking-on-If-None-Match-header.patch - Patch for 7.0 series
Please note that only the 7.0.Z and 6.1.Z series are supported at present, and 6.0.Z for severe vulnerabilities. Users of earlier unsupported releases are advised to upgrade as soon as possible as we cannot guarantee the continued availability of security fixes for unsupported releases.
There is a possible open redirect when using the redirect_to helper with untrusted user input.
Vulnerable code will look like this:
redirect_to(params[:some_param])
Rails 7.0 introduced protection against open redirects from calling redirect_to with untrusted user input. In prior versions the developer was fully responsible for only providing trusted input. However the check introduced could be bypassed by a carefully crafted URL.
All users running an affected release should either upgrade or use one of the workarounds immediately.
Releases
The FIXED releases are available at the normal locations.
Workarounds
There are no feasible workarounds for this issue.
Patches
To aid users who aren’t able to upgrade immediately we have provided patches for the two supported release series. They are in git-am format and consist of a single changeset.
7-0-Fix-sec-issue-with-_url_host_allowed.patch - Patch for 7.0 series
Please note that only the 7.0.Z and 6.1.Z series are supported at present, and 6.0.Z for severe vulnerabilities. Users of earlier unsupported releases are advised to upgrade as soon as possible as we cannot guarantee the continued availability of security fixes for unsupported releases.
CSP headers were only sent along with responses that Rails considered as
"HTML" responses. This left API requests without CSP headers, which could
possibly expose users to XSS attacks.
Releases
The FIXED releases are available at the normal locations.
Under certain circumstances response bodies will not be closed, for example a bug in a webserver or a bug in a Rack middleware. In the event a response is not notified of a close, ActionDispatch::Executor will not know to reset thread local state for the next request. This can lead to data being leaked to subsequent requests, especially when interacting with ActiveSupport::CurrentAttributes.
Upgrading to the FIXED versions of Rails will ensure mitigation of this issue even in the context of a buggy webserver or middleware implementation.
Patches
This has been fixed in Rails 7.0.2.2, 6.1.4.6, 6.0.4.6, and 5.2.6.2.
Workarounds
Upgrading is highly recommended, but to work around this problem the following middleware can be used:
classGuardedExecutor < ActionDispatch::Executordefcall(env)ensure_completed!superendprivatedefensure_completed!@executor.new.complete!if@executor.active?endend# Ensure the guard is inserted before ActionDispatch::ExecutorRails.application.configuredoconfig.middleware.swapActionDispatch::Executor,GuardedExecutor,executorend
NOTE: rails-ujs is part of Rails/actionview since 5.1.0.
There is a potential DOM based cross-site scripting issue in rails-ujs
which leverages the Clipboard API to target HTML elements that are
assigned the contenteditable attribute. This has the potential to
occur when pasting malicious HTML content from the clipboard that
includes a data-method, data-remote or data-disable-with attribute.
This vulnerability has been assigned the CVE identifier CVE-2023-23913.
Impact
If the specified malicious HTML clipboard content is provided to a
contenteditable element, this could result in the arbitrary execution
of javascript on the origin in question.
Releases
The FIXED releases are available at the normal locations.
Workarounds
We recommend that all users upgrade to one of the FIXED versions.
In the meantime, users can attempt to mitigate this vulnerability
by removing the contenteditable attribute from elements in pages
that rails-ujs will interact with.
Patches
To aid users who aren’t able to upgrade immediately we have provided
patches for the two supported release series. They are in git-am
format and consist of a single changeset.
rails-ujs-data-method-contenteditable-6-1.patch - Patch for 6.1 series
rails-ujs-data-method-contenteditable-7-0.patch - Patch for 7.0 series
Please note that only the 7.0.Z and 6.1.Z series are
supported at present, and 6.0.Z for severe vulnerabilities.
Users of earlier unsupported releases are advised to upgrade as
soon as possible as we cannot guarantee the continued availability
of security fixes for unsupported releases.
Credits
We would like to thank ryotak 15 for reporting this!
There is a possible XSS vulnerability in Action View tag helpers. Passing untrusted input as hash keys can lead to a possible XSS vulnerability. This vulnerability has been assigned the CVE identifier CVE-2022-27777.
Versions Affected: ALL
Not affected: NONE
Fixed Versions: 7.0.2.4, 6.1.5.1, 6.0.4.8, 5.2.7.1
Impact
If untrusted data is passed as the hash key for tag attributes, there is a possibility that the untrusted data may not be properly escaped which can lead to an XSS vulnerability.
There is a potential denial of service vulnerability present in ActiveRecord’s PostgreSQL adapter.
This has been assigned the CVE identifier CVE-2022-44566.
Versions Affected: All. Not affected: None. Fixed Versions: 5.2.8.15 (Rails LTS, which is a paid service and not part of the rubygem), 6.1.7.1, 7.0.4.1
Impact:
In ActiveRecord <7.0.4.1 and <6.1.7.1, when a value outside the range for a 64bit signed integer is provided to the PostgreSQL connection adapter, it will treat the target column type as numeric. Comparing integer values against numeric values can result in a slow sequential scan resulting in potential Denial of Service.
Releases
The fixed releases are available at the normal locations.
Workarounds
Ensure that user supplied input which is provided to ActiveRecord clauses do not contain integers wider than a signed 64bit representation or floats.
Patches
To aid users who aren’t able to upgrade immediately we have provided patches for the supported release series in accordance with our maintenance policy 1 regarding security issues. They are in git-am format and consist of a single changeset.
6-1-Added-integer-width-check-to-PostgreSQL-Quoting.patch - Patch for 6.1 series
7-0-Added-integer-width-check-to-PostgreSQL-Quoting.patch - Patch for 7.0 series
There is a possible vulnerability in ActiveRecord related to the sanitization of comments. This vulnerability has been assigned the CVE identifier CVE-2023-22794.
Previously the implementation of escaping for comments was insufficient for
If malicious user input is passed to either the annotate query method, the optimizer_hints query method, or through the QueryLogs interface which automatically adds annotations, it may be sent to the database with insufficient sanitization and be able to inject SQL outside of the comment.
In most cases these interfaces won’t be used with user input and users should avoid doing so.
Example vulnerable QueryLogs configuration (the default configuration is not vulnerable):
config.active_record.query_log_tags = [
{
something: -> { <some value including user input> }
}
]
All users running an affected release should either upgrade or use one of the workarounds immediately.
Releases
The FIXED releases are available at the normal locations.
Workarounds
Avoid passing user input to annotate and avoid using QueryLogs configuration which can include user input.
Patches
To aid users who aren’t able to upgrade immediately we have provided patches for the two supported release series. They are in git-am format and consist of a single changeset.
6-0-Make-sanitize_as_sql_comment-more-strict.patch - Patch for 6.0 series
6-1-Make-sanitize_as_sql_comment-more-strict.patch - Patch for 6.1 series
7-0-Make-sanitize_as_sql_comment-more-strict.patch - Patch for 7.0 series
Please note that only the 7.0.Z and 6.1.Z series are supported at present, and 6.0.Z for severe vulnerabilities. Users of earlier unsupported releases are advised to upgrade as soon as possible as we cannot guarantee the continued availability of security fixes for unsupported releases.
When serialized columns that use YAML (the default) are deserialized, Rails uses YAML.unsafe_load to convert the YAML data in to Ruby objects. If an attacker can manipulate data in the database (via means like SQL injection), then it may be possible for the attacker to escalate to an RCE.
There are no feasible workarounds for this issue, but other coders (such as JSON) are not impacted.
Possible Sensitive Session Information Leak in Active Storage
There is a possible sensitive session information leak in Active Storage. By
default, Active Storage sends a Set-Cookie header along with the user's
session cookie when serving blobs. It also sets Cache-Control to public.
Certain proxies may cache the Set-Cookie, leading to an information leak.
This vulnerability has been assigned the CVE identifier CVE-2024-26144.
The Active Storage module of Rails starting with version 5.2.0 is possibly vulnerable to code injection. This issue was patched in versions 5.2.6.3, 6.0.4.7, 6.1.4.7, and 7.0.2.3. To work around this issue, applications should implement a strict allow-list on accepted transformation methods or arguments. Additionally, a strict ImageMagick security policy will help mitigate this issue.
There is a possible file disclosure of locally encrypted files in Active Support. This vulnerability has been assigned the CVE identifier CVE-2023-38037.
ActiveSupport::EncryptedFile writes contents that will be encrypted to a temporary file. The temporary file’s permissions are defaulted to the user’s current umask settings, meaning that it’s possible for other users on the same system to read the contents of the temporary file.
Attackers that have access to the file system could possibly read the contents of this temporary file while a user is editing it.
All users running an affected release should either upgrade or use one of the workarounds immediately.
Releases
The fixed releases are available at the normal locations.
Workarounds
To work around this issue, you can set your umask to be more restrictive like this:
There is a vulnerability in ActiveSupport if the new bytesplice method is called on a SafeBuffer with untrusted user input.
This vulnerability has been assigned the CVE identifier CVE-2023-28120.
Versions Affected: All. Not affected: None Fixed Versions: 7.0.4.3, 6.1.7.3
Impact
ActiveSupport uses the SafeBuffer string subclass to tag strings as html_safe after they have been sanitized.
When these strings are mutated, the tag is should be removed to mark them as no longer being html_safe.
Ruby 3.2 introduced a new bytesplice method which ActiveSupport did not yet understand to be a mutation.
Users on older versions of Ruby are likely unaffected.
All users running an affected release and using bytesplice should either upgrade or use one of the workarounds immediately.
Workarounds
Avoid calling bytesplice on a SafeBuffer (html_safe) string with untrusted user input.
There is a possible regular expression based DoS vulnerability in Active Support. This vulnerability has been assigned the CVE identifier CVE-2023-22796.
Versions Affected: All Not affected: None Fixed Versions: 5.2.8.15 (Rails LTS, which is a paid service and not part of the rubygem), 6.1.7.1, 7.0.4.1
Impact
A specially crafted string passed to the underscore method can cause the regular expression engine to enter a state of catastrophic backtracking. This can cause the process to use large amounts of CPU and memory, leading to a possible DoS vulnerability.
This affects String#underscore, ActiveSupport::Inflector.underscore, String#titleize, and any other methods using these.
All users running an affected release should either upgrade or use one of the workarounds immediately.
Releases
The FIXED releases are available at the normal locations.
Workarounds
There are no feasible workarounds for this issue.
Users on Ruby 3.2.0 or greater may be able to reduce the impact by configuring Regexp.timeout.
Patches
To aid users who aren’t able to upgrade immediately we have provided patches for the two supported release series. They are in git-am format and consist of a single changeset.
6-1-Avoid-regex-backtracking-in-Inflector.underscore.patch - Patch for 6.1 series
7-0-Avoid-regex-backtracking-in-Inflector.underscore.patch - Patch for 7.0 series
Please note that only the 7.0.Z and 6.1.Z series are supported at present, and 6.0.Z for severe vulnerabilities. Users of earlier unsupported releases are advised to upgrade as soon as possible as we cannot guarantee the continued availability of security fixes for unsupported releases.
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🚨 Your current dependencies have known security vulnerabilities 🚨
This dependency update fixes known security vulnerabilities. Please see the details below and assess their impact carefully. We recommend to merge and deploy this as soon as possible!
Here is everything you need to know about this upgrade. Please take a good look at what changed and the test results before merging this pull request.
What changed?
✳️ rails (6.1.7.7 → 7.0.8.1) · Repo
Security Advisories 🚨
🚨 Rails has possible XSS Vulnerability in Action Controller
Release Notes
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Commits
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✳️ minitest-rails (6.1.1 → 7.0.1) · Repo · Changelog
Release Notes
7.0.0 (from changelog)
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↗️ actioncable (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Release Notes
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Commits
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↗️ actionmailbox (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
↗️ actionmailer (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Release Notes
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Commits
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↗️ actionpack (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Security Advisories 🚨
🚨 Missing security headers in Action Pack on non-HTML responses
🚨 Rails has possible XSS Vulnerability in Action Controller
🚨 Actionpack has possible cross-site scripting vulnerability via User Supplied Values to redirect_to
🚨 ReDoS based DoS vulnerability in Action Dispatch
🚨 ReDoS based DoS vulnerability in Action Dispatch
🚨 Open Redirect Vulnerability in Action Pack
🚨 Cross-site Scripting Vulnerability in Action Pack
🚨 Exposure of information in Action Pack
Release Notes
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Commits
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↗️ actiontext (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Release Notes
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Commits
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↗️ actionview (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Security Advisories 🚨
🚨 rails-ujs vulnerable to DOM Based Cross-site Scripting contenteditable HTML Elements
🚨 XSS Vulnerability in Action View tag helpers
Release Notes
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Commits
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↗️ activejob (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Release Notes
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Commits
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↗️ activemodel (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Release Notes
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Commits
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↗️ activerecord (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Security Advisories 🚨
🚨 Denial of Service Vulnerability in ActiveRecord's PostgreSQL adapter
🚨 SQL Injection Vulnerability via ActiveRecord comments
🚨 Active Record RCE bug with Serialized Columns
Release Notes
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Commits
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↗️ activestorage (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Security Advisories 🚨
🚨 Rails has possible Sensitive Session Information Leak in Active Storage
🚨 Possible code injection vulnerability in Rails / Active Storage
Release Notes
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Commits
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↗️ activesupport (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
Security Advisories 🚨
🚨 Active Support Possibly Discloses Locally Encrypted Files
🚨 Possible XSS Security Vulnerability in SafeBuffer#bytesplice
🚨 ReDoS based DoS vulnerability in Active Support's underscore
Release Notes
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Commits
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↗️ builder (indirect, 3.2.4 → 3.3.0) · Repo · Changelog
Commits
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↗️ erubi (indirect, 1.12.0 → 1.13.0) · Repo · Changelog
Release Notes
1.13.0 (from changelog)
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↗️ net-imap (indirect, 0.4.10 → 0.4.14) · Repo
Release Notes
0.4.14
0.4.13
0.4.12
0.4.11
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↗️ net-smtp (indirect, 0.4.0.1 → 0.5.0) · Repo · Changelog
Release Notes
0.5.0
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↗️ nio4r (indirect, 2.7.0 → 2.7.3) · Repo · Changelog
Release Notes
2.7.2 (from changelog)
2.7.1
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↗️ nokogiri (indirect, 1.16.2 → 1.16.7) · Repo · Changelog
Security Advisories 🚨
🚨 Nokogiri updates packaged libxml2 to v2.12.7 to resolve CVE-2024-34459
Release Notes
1.16.7
1.16.6
1.16.5
1.16.4
1.16.3
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↗️ railties (indirect, 6.1.7.7 → 7.0.8.1) · Repo · Changelog
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↗️ rake (indirect, 13.1.0 → 13.2.1) · Repo · Changelog
Release Notes
13.2.1
13.2.0
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↗️ sprockets-rails (indirect, 3.4.2 → 3.5.2) · Repo · Changelog
Release Notes
3.5.2
3.5.1
3.5.0
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