sanger / gatekeeper

Gatekeeper is used to track the production and validation of batches of tag plates for sequencing. It is designed to interface with the Sequencescape LIMS.
MIT License
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🚨 [security] Update rubocop 1.63.4 → 1.64.0 (minor) #401

Closed depfu[bot] closed 3 months ago

depfu[bot] commented 3 months ago

🚨 Your current dependencies have known security vulnerabilities 🚨

This dependency update fixes known security vulnerabilities. Please see the details below and assess their impact carefully. We recommend to merge and deploy this as soon as possible!


Here is everything you need to know about this update. Please take a good look at what changed and the test results before merging this pull request.

What changed?

✳️ rubocop (1.63.4 → 1.64.0) · Repo · Changelog

Release Notes

1.64.0

New features

  • #12904: Add new either_consistent SupportedShorthandSyntax to Style/HashSyntax. (@pawelma)
  • #12842: Add new Style/SendWithLiteralMethodName cop. (@koic)
  • #12309: Add new Style/SuperArguments cop. (@earlopain)
  • #12917: Suggest correct formatter name for --format command line option. (@koic)
  • #12242: Support AllowModifiersOnAttrs option for Style/AccessModifierDeclarations. (@krororo)
  • #11585: Support AllowedMethods for Style/DocumentationMethod. (@koic)

Bug fixes

  • #7189: Fix a false positive for Style/Copyright when using multiline copyright notice. (@koic)
  • #12914: Fix a false negative for Layout/EmptyComment when using an empty comment next to code after comment line. (@koic)
  • #12919: Fix false negatives for Style/ArgumentsForwarding when forward target is super. (@koic)
  • #12923: Fix false negatives for Style/ArgumentsForwarding when forward target is safe navigation method. (@koic)
  • #12894: Fix false positives for Style/MapIntoArray when using each without receiver with << to build an array. (@koic)
  • #12876: Fix an error for the lockfile parser if a gemfile exists but a lockfile doesn't. (@earlopain)
  • #12888: Fix --no-exclude-limit generating a todo with Max config instead of listing everything out with Exclude. (@earlopain)
  • #12898: Fix an error for TargetRailsVersion when parsing from the lockfile with prerelease rails. (@earlopain)

Changes

  • #12908: Add rubocop-rspec back to suggested extensions when rspec-rails is in use. (@pirj)
  • #12884: Align output from cop.documentation_url with --show-docs-url when passing a config as argument. (@earlopain)
  • #12890: Support ActiveSupportExtensionsEnabled for Style/SymbolProc. (@koic)
  • #12897: Respect user's intentions with workspace/executeCommand LSP method. (@koic)

1.63.5

Bug fixes

  • #12877: Fix an infinite loop error for Layout/FirstArgumentIndentation when specifying EnforcedStyle: with_fixed_indentation of Layout/ArrayAlignment. (@koic)
  • #12873: Fix an error for Metrics/BlockLength when the CountAsOne config is invalid. (@koic)
  • #12881: Fix incorrect autocorrect when Style/NumericPredicate is used with negations. (@fatkodima)
  • #12882: Fix Layout/CommentIndentation for comment-only pattern matching. (@nekketsuuu)

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by 59 commits:

↗️ racc (indirect, 1.7.3 → 1.8.0) · Repo · Changelog

Release Notes

1.8.0

What's Changed

  • Generate jar to build gem by @nobu in #255
  • Fix trivial typos by @ydah in #257
  • Try to fix test failure with Ruby 3.3 by @hsbt in #260
  • Reformat the rdoc so it renders correctly both locally and on github. by @zenspider in #258
  • Allow racc cmdline to read from stdin if no path specified. by @zenspider in #259
  • Add more grammars by @nurse in #222
  • Exclude 2.5 on macos-latest by @nobu in #263
  • Drop code for Ruby 1.6 by @nobu in #264
  • Refactor command line options by @nobu in #265
  • Change encode EUC-JP to UTF-8 by @ydah in #267
  • Organize README.ja.rdoc by @ydah in #266
  • Support error_on_expect_mismatch declaration in Racc grammar file by @yui-knk in #262
  • Bump up v1.8.0 by @yui-knk in #268

New Contributors

Full Changelog: v1.7.3...v1.8.0

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by 29 commits:

↗️ regexp_parser (indirect, 2.9.0 → 2.9.2) · Repo · Changelog

Release Notes

2.9.2 (from changelog)

Fixed

  • made the MFA requirement for changes to this gem visible on rubygems

2.9.1 (from changelog)

Fixed

  • fixed unnecessary $LOAD_PATH searches at load time

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by 10 commits:

↗️ rexml (indirect, 3.2.6 → 3.2.8) · Repo · Changelog

Security Advisories 🚨

🚨 REXML contains a denial of service vulnerability

Impact

The REXML gem before 3.2.6 has a DoS vulnerability when it parses an XML that has many <s in an attribute value.

If you need to parse untrusted XMLs, you many be impacted to this vulnerability.

Patches

The REXML gem 3.2.7 or later include the patch to fix this vulnerability.

Workarounds

Don't parse untrusted XMLs.

References

Release Notes

3.2.8

Fixes

  • Suppressed a warning

3.2.7

Improvements

Fixes

  • XPath: Fixed a bug of normalize_space(array).

  • XPath: Fixed a bug that wrong position is used with nested path.

    • GH-110

    • GH-122

    • Reported by jcavalieri.

    • Patch by NAITOH Jun.

  • Fixed a bug that an exception message can't be generated for
    invalid encoding XML.

    • GH-29

    • GH-123

    • Reported by DuKewu.

    • Patch by NAITOH Jun.

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by 33 commits:

🆕 strscan (added, 3.1.0)


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depfu[bot] commented 3 months ago

Closed in favor of #402.