sanger / gatekeeper

Gatekeeper is used to track the production and validation of batches of tag plates for sequencing. It is designed to interface with the Sequencescape LIMS.
MIT License
0 stars 5 forks source link

🚨 [security] Update rails 6.1.7.7 → 6.1.7.8 (patch) #404

Closed depfu[bot] closed 1 month ago

depfu[bot] commented 3 months ago

🚨 Your current dependencies have known security vulnerabilities 🚨

This dependency update fixes known security vulnerabilities. Please see the details below and assess their impact carefully. We recommend to merge and deploy this as soon as possible!


Here is everything you need to know about this update. Please take a good look at what changed and the test results before merging this pull request.

What changed?

✳️ rails (6.1.7.7 → 6.1.7.8) · Repo

Release Notes

6.1.7.8

Active Support

  • No changes.

Active Model

  • No changes.

Active Record

  • No changes.

Action View

  • No changes.

Action Pack

  • Include the HTTP Permissions-Policy on non-HTML Content-Types
    [CVE-2024-28103]

Active Job

  • No changes.

Action Mailer

  • No changes.

Action Cable

  • No changes.

Active Storage

  • No changes.

Action Mailbox

  • No changes.

Action Text

  • No changes.

Railties

  • No changes.

Does any of this look wrong? Please let us know.

Commits

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✳️ minitest (5.22.3 → 5.24.1) · Repo · Changelog

Release Notes

5.24.1 (from changelog)

  • 1 bug fix:

    • Fix the error message when an extension is invalid value. (y-yagi)

5.24.0 (from changelog)

  • 2 minor enhancements:

    • Added Minitest.register_plugin.

    • Extended plugin system to work with modules/classes for opt-out plugins.

  • 1 bug fix:

    • Removed anacronism, but allow load_plugins to exit gracefully if –disable=gems.

5.23.1 (from changelog)

  • 1 bug fix:

    • Fully qualify the Queue class to avoid conflicts with other libraries. (rafaelfranca)

5.23.0 (from changelog)

  • 3 minor enhancements:

    • Added -Werror to raise on any warning output. (byroot)

    • Added UnexpectedWarning as a failure summary type, added count to output if activated.

    • Added minitest/manual_plugins.rb w/ new Minitest.load method. (tenderlove)

  • 2 bug fixes:

    • Allow empty_run! and reporter to display summary for empty runs. (zzak)

    • Make test task verbose using either rake’s -v or -t (was just -t).

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Commits

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↗️ actioncable (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ actionmailbox (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

↗️ actionmailer (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ actionpack (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Security Advisories 🚨

🚨 Missing security headers in Action Pack on non-HTML responses

Permissions-Policy is Only Served on HTML Content-Type

The application configurable Permissions-Policy is only served on responses
with an HTML related Content-Type.

This has been assigned the CVE identifier CVE-2024-28103.

Versions Affected: >= 6.1.0
Not affected: < 6.1.0
Fixed Versions: 6.1.7.8, 7.0.8.4, and 7.1.3.4

Impact

Responses with a non-HTML Content-Type are not serving the configured Permissions-Policy. There are certain non-HTML Content-Types that would benefit from having the Permissions-Policy enforced.

Releases

The fixed releases are available at the normal locations.

Workarounds

N/A

Patches

To aid users who aren't able to upgrade immediately we have provided patches for
the supported release series in accordance with our
maintenance policy
regarding security issues. They are in git-am format and consist of a
single changeset.

  • 6-1-include-permissions-policy-header-on-non-html.patch - Patch for 6.1 series
  • 7-0-include-permissions-policy-header-on-non-html.patch - Patch for 7.0 series
  • 7-1-include-permissions-policy-header-on-non-html.patch - Patch for 7.1 series

Credits

Thank you shinkbr for reporting this!

Release Notes

6.1.7.8 (from changelog)

  • Include the HTTP Permissions-Policy on non-HTML Content-Types [CVE-2024-28103]

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Commits

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↗️ actiontext (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ actionview (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ activejob (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ activemodel (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ activerecord (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ activestorage (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ activesupport (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ builder (indirect, 3.2.4 → 3.3.0) · Repo · Changelog

Commits

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↗️ concurrent-ruby (indirect, 1.2.3 → 1.3.3) · Repo · Changelog

Release Notes

1.3.3

What's Changed

Full Changelog: v1.3.2...v1.3.3

1.3.2

What's Changed

New Contributors

Full Changelog: v1.3.1...v1.3.2

1.3.1

This release is essentially v1.3.0, but with a properly packaged gem. There was an issue publishing v1.3.0 and that gem needed to be yanked to avoid breaking downstream projects. The v1.3.0 changelog is reproduced below.

What's Changed

  • Add Concurrent.usable_processor_count that is cgroups aware by @casperisfine in #1038
  • Align Java Executor Service behavior for shuttingdown?, shutdown? by @bensheldon in #1042

New Contributors

Full Changelog: v1.2.3...v1.3.1

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Commits

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↗️ erubi (indirect, 1.12.0 → 1.13.0) · Repo · Changelog

Release Notes

1.13.0 (from changelog)

* Define Erubi.h as a module function (jeremyevans)

* Add erubi/capture_block, supporting capturing block output via standard <%= and <%== tags (jeremyevans)

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Commits

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↗️ i18n (indirect, 1.14.4 → 1.14.5) · Repo · Changelog

Release Notes

1.14.5

What's Changed

  • Explicitly bundle racc gem for Ruby 3.3+ by @amatsuda in #690
  • Optimize I18n::Locale::Fallbacks#[] for recursive locale mappings by @uiur in #692
  • Add I18n.interpolation_keys by @tom-lord in #682
  • Fix syntax in documentation for I18n::Backend::Base.interpolate by @tom-lord in #691
  • Fix that escaped interpolations with reserved keywords raised ReservedInterpolationKey by @Bilka2 in #688

New Contributors

Full Changelog: v1.14.4...v1.14.5

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Commits

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↗️ method_source (indirect, 1.0.0 → 1.1.0) · Repo · Changelog

Commits

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↗️ net-imap (indirect, 0.4.10 → 0.4.14) · Repo

Release Notes

0.4.14

What's Changed

Added

  • ✨ Add Config methods: #to_h, #update, and #with by @nevans in #300
  • 🔧 Add versioned defaults by @nevans in #302
  • 🔧 Add Config#load_defaults by @nevans in #301

Fixed

  • 🐛 Fix Config#clone to clone internal data struct by @nevans in #303
  • 🔇 Fix ruby 2.7 warnings by @nevans in #304

Full Changelog: v0.4.13...v0.4.14

0.4.13

What's Changed

✨ Added features

  • 🔧 Add Config class for debug, open_timeout, and idle_response_timeout by @nevans in #291
    • Net::IMAP.config for global configuration. This enables global defaults for previously client-local configuration:
      • open_timeout
      • idle_response_timeout
    • config keyword parameters for Net::IMAP.new
    • Net::IMAP#config for client configuration. This enables client-local overrides of previously global configuration:
      • debug
    • ♻️ Minor Config class tidy up by @nevans in #295
  • 🔧 Add config option for sasl_ir by @nevans in #294
  • 🔊 Add config option for responses_without_block by @nevans in #293

📖 Documentation

  • 📖 Improve #idle and #idle_done rdoc by @nevans in #290
  • 📚 Update rdoc for Config and related updates by @nevans in #297
  • 📚 Improve rdoc for Net::IMAP.new ssl: params by @nevans in #298
  • 📚 Improve Config class rdoc by @nevans in #296

🛠️ Other changes

  • 📦 Don't keep .github, .gitignore, .mailmap in gem by @nevans in #299
  • ⬆️ Bump step-security/harden-runner from 2.8.0 to 2.8.1 by @dependabot in #292

Full Changelog: v0.4.12...v0.4.13

0.4.12

What's Changed

  • 📚 Fix many rdoc spelling mistakes by @nevans in #279
  • 📦 Update workflow with configure_trusted_publisher by @nevans in #280
  • 🔍 Simplify handling of ResponseParser test failures by @nevans in #281
  • ⬆️ Bump step-security/harden-runner from 2.7.1 to 2.8.0 by @dependabot in #289
  • Clarify the license of net-imap by @shugo in #275

Full Changelog: v0.4.11...v0.4.12

0.4.11

What's Changed

Server workarounds

Miscellaneous

  • 🐛 Fix parser benchmarks generation by @nevans in #266
  • ✅ Add basic test for SEARCH / UID SEARCH command by @nevans in #267
  • 📧 Update gem email address and git mailmap by @nevans in #264
  • ✅ Update Github test workflow name by @nevans in #268
  • ⬆️ Bump actions/configure-pages from 4 to 5 by @dependabot in #270
  • 🔧🔒 Configure RubyGems Trusted Publishing by @nevans in #265

New Contributors

Full Changelog: v0.4.10...v0.4.11

Does any of this look wrong? Please let us know.

Commits

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↗️ net-smtp (indirect, 0.4.0.1 → 0.5.0) · Repo · Changelog

Release Notes

0.5.0

What's Changed

  • Allow case-insensitive strings for SASL mechanism by @nevans in #64
  • Remove unused private auth_method by @nevans in #67
  • Delegate checking auth args to the authenticator by @nevans in #73
  • Make #auth_capable? public by @nevans in #63
  • Updated docs, especially TLS and SASL-related by @nevans in #66
  • Renew test certificates by @sorah in #75
  • Fix version extraction to work with non ASCII characters with any LANG by @kateinoigakukun in #76
  • Replace non-ASCII EM DASH (U+2014) with ASCII hyphen (U+002D) by @kateinoigakukun in #78
  • Use reusing workflow for Ruby versions by @m-nakamura145 in #79
  • Add XOAUTH2 authenticator by @mantas in #80
  • Make the test suite compatible with --enable-frozen-string-literal by @casperisfine in #81
  • version 0.5.0 by @tmtm in #82

New Contributors

Full Changelog: v0.4.0.1...v0.5.0

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Commits

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↗️ nio4r (indirect, 2.7.0 → 2.7.3) · Repo · Changelog

Release Notes

2.7.2 (from changelog)

  • Modernize gem (list all authors, etc).
  • Drop official support for Ruby 2.4.
  • Fix JRuby release version.

2.7.1

What's Changed

Full Changelog: v2.7.0...v2.7.1

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by more commits than we can show here.

↗️ nokogiri (indirect, 1.16.2 → 1.16.7) · Repo · Changelog

Security Advisories 🚨

🚨 Nokogiri updates packaged libxml2 to v2.12.7 to resolve CVE-2024-34459

Summary

Nokogiri v1.16.5 upgrades its dependency libxml2 to 2.12.7 from 2.12.6.

libxml2 v2.12.7 addresses CVE-2024-34459:

Impact

There is no impact to Nokogiri users because the issue is present only in libxml2's xmllint tool which Nokogiri does not provide or expose.

Timeline

  • 2024-05-13 05:57 EDT, libxml2 2.12.7 release is announced
  • 2024-05-13 08:30 EDT, nokogiri maintainers begin triage
  • 2024-05-13 10:05 EDT, nokogiri v1.16.5 is released and this GHSA made public
Release Notes

1.16.7

v1.16.7 / 2024-07-27

Dependencies

  • [CRuby] Vendored libxml2 is updated to v2.12.9, which the upstream release notes state is a security release to address CVE-2024-40896. Nokogiri's maintainers believe this vulnerability does not affect users of Nokogiri, but we advise upgrading at your earliest convenience anyway.

sha256 checksums:

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1.16.6

v1.16.6 / 2024-06-13

Dependencies

  • [CRuby] Vendored libxml2 is updated to v2.12.8, which the release notes state is a bugfix release.

sha256 checksums:

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1.16.5

v1.16.5 / 2024-05-13

Security

  • [CRuby] Vendored libxml2 is updated to address CVE-2024-34459. See GHSA-r95h-9x8f-r3f7 for more information.

Dependencies


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1.16.4

v1.16.4 / 2024-04-10

Dependencies

  • [CRuby] Vendored zlib in the precompiled native gems is updated to v1.3.1 from v1.3. Nokogiri is not affected by the minizip CVE patched in this version, but this update may satisfy some security scanners. Related, see this discussion about removing the compression libraries altogether in a future version of Nokogiri.

sha256 checksums:

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1.16.3

v1.16.3 / 2024-03-15

Dependencies

Changed

  • [CRuby] XML::Reader sets the @encoding instance variable during reading if it is not passed into the initializer. Previously, it would remain nil. The behavior of Reader#encoding has not changed. This works around changes to how libxml2 reports the encoding used in v2.12.6.

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6bf0918233959c7d5e703061ada0f436544612397475a866aa314071f02bfabb  nokogiri-1.16.3-java.gem
656f163dd287671c3a28157a2e853ee1a36afeb3f4185a78af863f3980efc58d  nokogiri-1.16.3-x64-mingw-ucrt.gem
7330f65cf2f8fa442327112b6515b4988f396d23010d33571714fd2ac0648fb9  nokogiri-1.16.3-x64-mingw32.gem
08d8a369940fa2309379cd8af1e7b3cc702b0115d3ddd197cfa7b33daedfd541  nokogiri-1.16.3-x86-linux.gem
cd26e99fa6388cd73c8892bb99ac98af162fe83c8f71c6473dfeba7aac76bcb9  nokogiri-1.16.3-x86-mingw32.gem
bc22786f4db4c32a5587e3b77a106408148d3bb1602dd0b52c0f5c968c42d17d  nokogiri-1.16.3-x86_64-darwin.gem
47a3330e41b49a100225b6fab490b2dc43410931e01e791886e0c2998412e8cb  nokogiri-1.16.3-x86_64-linux.gem
498aa253ccd5b89a0fa5c4c82b346d22176fc865f4a12ef8da642064d1d3e248  nokogiri-1.16.3.gem

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↗️ railties (indirect, 6.1.7.7 → 6.1.7.8) · Repo · Changelog

Release Notes

6.1.7.8 (from changelog)

  • No changes.

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Commits

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↗️ rake (indirect, 13.1.0 → 13.2.1) · Repo · Changelog

Release Notes

13.2.1

What's Changed

  • Suppressed "internal:array:52:in 'Array#each'" from backtrace by @hsbt in #554
  • Bump actions/configure-pages from 4 to 5 by @dependabot in #553

Full Changelog: v13.2.0...v13.2.1

13.2.0

What's Changed

New Contributors

Full Changelog: v13.1.0...v13.2.0

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Commits

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↗️ sprockets-rails (indirect, 3.4.2 → 3.5.2) · Repo · Changelog

Release Notes

3.5.1

What's Changed

  • Handle the gem being loaded via sprockets/railtie rather than the expected sprockets/rails entrypoint. by @mamhoff in #525

New Contributors

Full Changelog: v3.5.0...v3.5.1

3.5.0

What's Changed

  • Add useful message for logger silence error by @rossta in #381
  • Use a dedicated ActiveSupport::Deprecation for Rails 7.2 compatibility by @etiennebarrie in #517
  • Dropped support for Rails versions older than 6.1

New Contributors

Full Changelog: v3.4.2...v3.5.0

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Commits

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↗️ zeitwerk (indirect, 2.6.13 → 2.6.17) · Repo · Changelog

Release Notes

2.6.17 (from changelog)

  • Fix log message when eager loading a directory ends.

2.6.16 (from changelog)

  • Logging prints a message when a directory that was not ignored is skipped anyway because it contains no Ruby files.

  • Internal refactors.

2.6.15 (from changelog)

  • Internal improvements.

2.6.14 (from changelog)

  • Implements Zeitwerk::Loader#all_expected_cpaths, which returns a hash that maps the absolute paths of the files and directories managed by the receiver to their expected constant paths.

    Please, check its documentation for further details.

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Commits

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depfu[bot] commented 1 month ago

Closing because this update has already been applied