DPL-1057 Duplex Seq - Modify file handling to store metadata on requests

[andrewsparkes]

User story As PSD we would like to modify Duplex Seq to store metadata on requests in a similar way to Targeted NanoSeq.

Who are the primary contacts for this story Andrew

Who is the nominated tester for UAT PSD - check integration suite test still works and metadata is stored on Requests

Acceptance criteria To be considered successful the solution must allow:

• [ ] create Duplex Seq specific versions of labware creator and csv file handling classes, extending both Duplex Seq and Targeted Nanoseq versions off abstract classes
• [ ] modify file handling upload to save to Request poly-metadata (see Targeted NanoSeq)
• [ ] modify concentration file export later in pipeline to pull metadata from Requests (see Targeted NanoSeq)

Dependencies This story is blocked by the following dependencies: DPL-975, 976 and 977

References This story has a non-blocking relationship with: https://github.com/sanger/limber/issues/1554

Additional context Targeted NanoSeq was converted to store metadata on Requests first, so this story is to convert Duplex Seq (they were both using the same labware creator and csv file handling classes previously). Some code refactoring is going to be needed.

[stevieing]

Closed as done.

[SujitDey2022]

Closed by mistake

[SujitDey2022]

Need to check with Sara W. if the process mimics Targeted Nano Seq and this could help decide if this story is needed.