sanger / limber

A flexible lims extension of the old app
MIT License
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🚨 [security] [ruby] Update nokogiri 1.16.3 → 1.16.5 (patch) #1686

Closed depfu[bot] closed 1 week ago

depfu[bot] commented 1 month ago

🚨 Your current dependencies have known security vulnerabilities 🚨

This dependency update fixes known security vulnerabilities. Please see the details below and assess their impact carefully. We recommend to merge and deploy this as soon as possible!


Here is everything you need to know about this update. Please take a good look at what changed and the test results before merging this pull request.

What changed?

↗️ nokogiri (indirect, 1.16.3 → 1.16.5) · Repo · Changelog

Security Advisories 🚨

🚨 Nokogiri updates packaged libxml2 to v2.12.7 to resolve CVE-2024-34459

Summary

Nokogiri v1.16.5 upgrades its dependency libxml2 to
2.12.7 from 2.12.6.

libxml2 v2.12.7 addresses CVE-2024-34459:

Impact

There is no impact to Nokogiri users because the issue is present only
in libxml2's xmllint tool which Nokogiri does not provide or expose.

Timeline

  • 2024-05-13 05:57 EDT, libxml2 2.12.7 release is announced
  • 2024-05-13 08:30 EDT, nokogiri maintainers begin triage
  • 2024-05-13 10:05 EDT, nokogiri v1.16.5 is released
    and this GHSA made public

🚨 Nokogiri updates packaged libxml2 to v2.12.7 to resolve CVE-2024-34459

Summary

Nokogiri v1.16.5 upgrades its dependency libxml2 to 2.12.7 from 2.12.6.

libxml2 v2.12.7 addresses CVE-2024-34459:

Impact

There is no impact to Nokogiri users because the issue is present only in libxml2's xmllint tool which Nokogiri does not provide or expose.

Timeline

  • 2024-05-13 05:57 EDT, libxml2 2.12.7 release is announced
  • 2024-05-13 08:30 EDT, nokogiri maintainers begin triage
  • 2024-05-13 10:05 EDT, nokogiri v1.16.5 is released and this GHSA made public
Release Notes

1.16.5

v1.16.5 / 2024-05-13

Security

  • [CRuby] Vendored libxml2 is updated to address CVE-2024-34459. See GHSA-r95h-9x8f-r3f7 for more information.

Dependencies


sha256 checksums:

af0f44fa3e664dfb2aa10de8b551447d720c1e8d1f0aa3f35783dcc43e40a874  nokogiri-1.16.5-aarch64-linux.gem
23dc2357b26409a5c33b7e32a82902f0e9995305420f16d1a03ab3ea1a482fec  nokogiri-1.16.5-arm-linux.gem
950d037530edb49f75ad35de0b8038b970a7dda57e2b6326895b0e49fadf6214  nokogiri-1.16.5-arm64-darwin.gem
b7aefc94370c62476b8528e8d8abb6160203abd84a1f4eceda8f1aa8974d9989  nokogiri-1.16.5-java.gem
ec2167160df8fec3137bf95d574ed80ebc1d002bb3b281546b60b4aa9002466e  nokogiri-1.16.5-x64-mingw-ucrt.gem
6984200491fac69974005ecfa2de129d61843d345eafa5d6f58e8b908d1cf107  nokogiri-1.16.5-x64-mingw32.gem
abdc389ab1ec6604492da16bd9d06ad746fdb6bd6a1bd274c400d61ffcadb3c4  nokogiri-1.16.5-x86-linux.gem
63d24981345856f2baf7f4089870a62d3042fb8d3021b280fb04fc052532e3c4  nokogiri-1.16.5-x86-mingw32.gem
71b5f54e378c433d13df67c3b71acc4716129da62402d8181f310c4216a63279  nokogiri-1.16.5-x86_64-darwin.gem
0ca238da870066bed2f7837af6f35791bb9b76c4c5638999c46aac44818a6a97  nokogiri-1.16.5-x86_64-linux.gem
ec36162c68984fa0a90a5c4ae7ab7759460639e716cc1ce75f34c3cb54158ad2  nokogiri-1.16.5.gem

1.16.4

v1.16.4 / 2024-04-10

Dependencies

  • [CRuby] Vendored zlib in the precompiled native gems is updated to v1.3.1 from v1.3. Nokogiri is not affected by the minizip CVE patched in this version, but this update may satisfy some security scanners. Related, see this discussion about removing the compression libraries altogether in a future version of Nokogiri.

sha256 checksums:

bdb1dc4378ebcf3ade8f440c7df68f6d76946a1a96c4823a2b4c53c01a320cd5  nokogiri-1.16.4-aarch64-linux.gem
0c994b9996d5576eddcc3201a94ef2bff6fc3627c4ae4d2708b0ec9b9743ec6a  nokogiri-1.16.4-arm-linux.gem
8e86abb64c93c06d3c588042a0e757279e8f1dc88b5210a00be892a9a7a27196  nokogiri-1.16.4-arm64-darwin.gem
bf84fa28be4943692bd64772186e0832fb1061f80714ccb93e111e9d72b1cadc  nokogiri-1.16.4-java.gem
a46808467c1f63a2031e1ca0715cd5336bb4ec759e9c0e2f4c951c1cc30994ae  nokogiri-1.16.4-x64-mingw-ucrt.gem
4cdf64bc5e9443ec3e0b595347ecc8affe21968d9ae934c0825d26630ef96468  nokogiri-1.16.4-x64-mingw32.gem
d86d21bae47dd9f6f5223055e45d33fae08b0b89aad94cbc0ece4f4274fa7af5  nokogiri-1.16.4-x86-linux.gem
d488b872884844686780fda7cf5da44ee884d32faa713a55aeb4736d76718168  nokogiri-1.16.4-x86-mingw32.gem
a896e52a56951ffb0e6a9279afbf485d683e357a053d27f4cfcb2a73b0824628  nokogiri-1.16.4-x86_64-darwin.gem
92ff4f09910255fec84b3bc4c4b182e94cada3ed12b9f7a6ea058e0af186fb31  nokogiri-1.16.4-x86_64-linux.gem
62c116c3a14b4ed4e1faec786da266c4bd4c717a0bd04a9916164a7046040f45  nokogiri-1.16.4.gem

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by 7 commits:

↗️ mini_portile2 (indirect, 2.8.5 → 2.8.6) · Repo · Changelog

Release Notes

2.8.6

2.8.6 / 2024-04-14

Added

  • When using CMake on FreeBSD, default to clang's "cc" and "c++" compilers. (#139 by @mudge)

Does any of this look wrong? Please let us know.

Commits

See the full diff on Github. The new version differs by 6 commits:


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codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 91.17%. Comparing base (add87a5) to head (8543e4b).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #1686 +/- ## ======================================== Coverage 91.17% 91.17% ======================================== Files 362 362 Lines 7513 7513 ======================================== Hits 6850 6850 Misses 663 663 ``` | [Flag](https://app.codecov.io/gh/sanger/limber/pull/1686/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | Coverage Δ | | |---|---|---| | [javascript](https://app.codecov.io/gh/sanger/limber/pull/1686/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `93.65% <ø> (ø)` | | | [pull_request](https://app.codecov.io/gh/sanger/limber/pull/1686/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `91.17% <ø> (ø)` | | | [push](https://app.codecov.io/gh/sanger/limber/pull/1686/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `91.17% <ø> (ø)` | | | [ruby](https://app.codecov.io/gh/sanger/limber/pull/1686/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `90.82% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger#carryforward-flags-in-the-pull-request-comment) to find out more.

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codeclimate[bot] commented 1 month ago

Code Climate has analyzed commit 8543e4b1 and detected 0 issues on this pull request.

The test coverage on the diff in this pull request is 100.0% (50% is the threshold).

This pull request will bring the total coverage in the repository to 90.8% (0.0% change).

View more on Code Climate.