sanger / limber

A config-driven LIMS built on Sequencescape, primarily for running library preparation pipelines in the laboratory
MIT License
4 stars 8 forks source link

Y24-265 - RNA FFPE pipeline #2004

Closed BenTopping closed 2 weeks ago

BenTopping commented 1 month ago

Changes proposed in this pull request

Notes

There is an associated PR in the integration suite for the RNA FFPE spec.

Sequencescape PR: https://github.com/sanger/sequencescape/pull/4415

codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 77.95%. Comparing base (81b25ef) to head (fe551b2). Report is 87 commits behind head on develop.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #2004 +/- ## =========================================== - Coverage 77.97% 77.95% -0.03% =========================================== Files 463 463 Lines 17706 17711 +5 Branches 225 225 =========================================== Hits 13807 13807 - Misses 3897 3902 +5 Partials 2 2 ``` | [Flag](https://app.codecov.io/gh/sanger/limber/pull/2004/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | Coverage Δ | | |---|---|---| | [javascript](https://app.codecov.io/gh/sanger/limber/pull/2004/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `69.66% <ø> (-0.04%)` | :arrow_down: | | [pull_request](https://app.codecov.io/gh/sanger/limber/pull/2004/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `77.95% <ø> (?)` | | | [push](https://app.codecov.io/gh/sanger/limber/pull/2004/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `77.97% <ø> (ø)` | | | [ruby](https://app.codecov.io/gh/sanger/limber/pull/2004/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger) | `91.16% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sanger#carryforward-flags-in-the-pull-request-comment) to find out more.

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codeclimate[bot] commented 3 weeks ago

Code Climate has analyzed commit fe551b29 and detected 0 issues on this pull request.

The test coverage on the diff in this pull request is 100.0% (50% is the threshold).

This pull request will bring the total coverage in the repository to 91.1% (0.0% change).

View more on Code Climate.