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sanger / unified_warehouse

MIT License
2 stars 9 forks source link

GPL-418 - As a developer I need to able to multiplex ONT runs #96

Closed stevieing closed 4 years ago

stevieing commented 4 years ago

User story As NPG I need ONT to support multiplexing by adding tagging information to the oseq_flowcell table. ONT protocols now allow multiple tags (e.g. 24 native barcodes plus 96 PCR barcodes to give 2,304 plex) so we should consider having space for additional tag information.

Who the primary contacts are for this story Keith James

Acceptance criteria To be considered successful the solution must allow:

  1. The following fields need to be available in the oseq_flowcell table:

    • tag_identifier
    • tag_sequence
    • tag_set_id_lims
    • tag_set_name

  2. The following fields should also be available in the oseq_flowcell table:

    • tag2_set_id_lims LIMs-specific identifier of the tag set
    • tag2_set_name WTSI-wide tag set name
    • tag2_identifier The position of tag within the tag group
    • tag2_sequence Tag sequence

Additional context Add any other context or screenshots about the feature request here.

stevieing commented 4 years ago

Make requested_data_type and pipeline_id_lims nullable for instrument name it is GXB02004

stevieing commented 4 years ago

Try and create a single message for each run or flowcell. This would involve making changes to traction service to create a single message and for the warehouse to accept a single message.