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sanjaynagi / AmpSeeker

A state-of-the-art snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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a single cohort_columns config option for all analyses #107

Closed sanjaynagi closed 5 months ago

sanjaynagi commented 5 months ago

Rather than have lots of config options, lets just have the user indicate a single column in metadata to use in all analyses.

And this option can take a list of columns, in which case it will be done for both. E.g PCA by taxon AND location. Useful for aggregating stats anyway.

sanjaynagi commented 5 months ago

Will require writing bits of code to loop over cohort_columns and perform analysis