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sanjaynagi / AmpSeeker

A state-of-the-art snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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show frequencies of all ALTs #110

Closed sanjaynagi closed 5 months ago

sanjaynagi commented 5 months ago

Without specific alleles, how can we know which mutant is right? (for multiallelic snps).

We need to add REF and ALT allele columns to the bed file, and use that in the workflow.

sanjaynagi commented 5 months ago

Ok, we should try and calculate freqs for each ALT and list them all so we can see everything