enable multiple cohort columns

sanjaynagi / AmpSeeker

A state-of-the-art snakemake workflow for amplicon sequencing

https://sanjaynagi.github.io/AmpSeeker/

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Closed sanjaynagi closed 5 months ago

sanjaynagi commented 5 months ago

Simplify the config so we only have one option for cohort columns
Enable a list of cohort columns to be able to be passed, and modify notebooks to loop through these cohort columns

So for example, users can summarise allele frequencies by BOTH taxon and location.

sanjaynagi commented 5 months ago

This PR will close #107