Replace TrimFastQs from bbmap to alternative tool - Githubissues

sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing

https://sanjaynagi.github.io/AmpSeeker/

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Replace TrimFastQs from bbmap to alternative tool #25

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

bbduk is not a dependency, lets avoid

sanjaynagi commented 1 year ago

@eddUG suggests fastp which looks good https://github.com/OpenGene/fastp

sanjaynagi commented 1 year ago

resolved by #26