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sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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Private webpage 24 04 23 #31

Closed ChabbyTMD closed 1 year ago

ChabbyTMD commented 1 year ago

16

Added functionality to create jupyterbook webpage with alignment results.

sanjaynagi commented 1 year ago

Hey @ChabbyTMD, I've just pushed those minor changes back. I also renamed the private_webpage.smk to jupyter-book.smk, also removed the underscores to become hyphens in the other rule files, hope that's cool.

ChabbyTMD commented 1 year ago

Yes this is fine by me.

sanjaynagi commented 1 year ago

To get around the CI error, ive added a line to the github action, which copies the docs/ directory into the .tests/ folder prior to running CI.

I wanted to avoid just copying it into the .tests/ folder generally, as it would increase the size of the directory and we would be duplicating code, and would need to keep doing that each time we edit the ampseeker-book.

sanjaynagi commented 1 year ago

@ChabbyTMD @eddUG Going to merge so I can add the coverage notebook.

Fantastic to have this first implementation of the jupyter-book.