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sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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Make all analyses optional #32

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

(where possible)

controlled in the config.yaml

sanjaynagi commented 1 year ago

Idea to have sections in the config, like - 

Bcl-convert:
    True

QualityControl:
    fastp: True
    coverage: True
    qualimap: False
    multiqc: True

Analysis:
    PCA: True
    AlleleFrequencies: True 
    Map: False
sanjaynagi commented 1 year ago

cc @ChabbyTMD