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sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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implement principal components analysis notebook #37

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

This PR adds a notebook which performs principal components analysis. Will close #17

Based on the first 100 samples from the GAARD data, the looks sensible, with a clear split between gambiae from Ghana and coluzzii from Benin.