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sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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Make all analyses optional in the config.yaml #43

Closed ChabbyTMD closed 1 year ago

ChabbyTMD commented 1 year ago

Partly addresses #32

Makes BCL convert rule optional.

sanjaynagi commented 1 year ago

For CI, the .test/config.yaml needs updating too.

sanjaynagi commented 1 year ago

Hey @ChabbyTMD , I've just pushed a few changes to make all analyses optional via the config.

Logic is handled in common.smk. You may want to take a look :)

sanjaynagi commented 1 year ago

I've also changed the use of underscores in the config to hyphens. It looks prettier :)