Closed sanjaynagi closed 1 year ago
After demultiplexing some of this data is stored in Reports/demultiplex_stats.csv, however, we wont have this file if people use their own fastqs.
As well as demultiplexing statistics, we can also look at
Median Q scores Median insert length Adaptor contamination
Closing for now.
A script which after demultiplexing, counts reads per sample and makes a heatmap of reads per well of each input plate.