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sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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rename samples after demultiplexing in more robust way #46

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

Currently, the pipeline will fail if samples have 001 in their sampleID

sanjaynagi commented 1 year ago

Bcl-convert spits out a file 'fastq_list.csv' which we can use for this, and should be robust.