search

sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
0 stars 3 forks source link

bcl convert not available through conda #58

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

Need to change to bcl2fastqe

sanjaynagi commented 1 year ago

Cant use bcl2fastq as it does not provide fastq_list.csv which is useful for renaming samples. So dumb.

Having to use an unofficial docker image of bcl-convert with singularity.