Closed sanjaynagi closed 1 year ago
This PR adds test data to .test/resources/reads, which is real An. gambiae amplicon data from malariagen.
Currently, it makes the repo quite large in size, so later we may want to remove some samples, or subsample them to reduce file size, and speed of the test workflow.
BGZIP is not being installed by htslib conda, its not clear atm how to install it, as there is no dedicated conda repo.
it does seem to by on pypi.
https://github.com/marketplace/actions/pip-installer should be able to use this to install bgzip
Finally working :')
NB wrappers are a good way to get around dependency conflicts.
I have now reduced the number of samples to 10 (from 26), in order to reduce overall file size.
splitting @ChabbyTMD awesome PR #2 into two - Moving all the CI related comits into this PR instead.
this will close #5.