Closed ChabbyTMD closed 1 year ago
Did you still get this error when updating snakemake @ChabbyTMD ?
Hi Sanjay, can I follow up on this later this evening. I've been having issues updating my snakemake install on my cluster workspace.
No worries Trevor. If it is the snakemake version, we should merge anyway, as it’s better for the workflow to work with diff versions of snakemake Sent from my iPhoneOn 14 Jul 2023, at 14:44, Trevor Mugoya @.***> wrote: Hi Sanjay, can I follow up on this later this evening. I've been having issues updating my snakemake install on my cluster workspace.
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Hi Sanjay, I receive the same error while using snakemake 7.30.1. Also, I have a fix for the missing fastp and qualimap outputs in multiqc. Will add this to a separate PR.
Ok, going to merge this now. Thanks Trevor.
Hopefully it doesn't cause issues with the other PR, that one might need updating, not sure :)
Addresses #69 Use a holding directory in
resources
for reads generated from bcl_convert. Reads are subsequently renamed and moved toreads
dir for usual workflow execution.