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sanjaynagi / AmpSeeker

A state-of-the-art snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
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Make bed input optional #89

Open sanjaynagi opened 11 months ago

sanjaynagi commented 11 months ago

The workflow could be run on all amplicons only (and not specific target SNPs aswell). If we can reduce the number of inputs for some users that's a bonus.

Things like allele frequencies and coverage would have to be updated, to allow them to work with the all amplicons vcf

sanjaynagi commented 10 months ago

This will also be required if we want to make AmpSeeker able to analyse WGS data.