search

sanjaynagi / AmpSeeker

A snakemake workflow for amplicon sequencing
https://sanjaynagi.github.io/AmpSeeker/
0 stars 3 forks source link

Make bed input optional #89

Closed sanjaynagi closed 1 day ago

sanjaynagi commented 1 year ago

The workflow could be run on all amplicons only (and not specific target SNPs aswell). If we can reduce the number of inputs for some users that's a bonus.

Things like allele frequencies and coverage would have to be updated, to allow them to work with the all amplicons vcf

sanjaynagi commented 1 year ago

This will also be required if we want to make AmpSeeker able to analyse WGS data.

sanjaynagi commented 1 day ago

closing for now