indels fix + add dsx to targets file

sanjaynagi / AmpSeeker

A state-of-the-art snakemake workflow for amplicon sequencing

https://sanjaynagi.github.io/AmpSeeker/

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Closed sanjaynagi closed 7 months ago

sanjaynagi commented 7 months ago

Fix in case an indel is called at same position as target SNP. Tried to prevent indel calling in Samtools mpileup but didn't seem to work?
Add dsx to targets bed file