Closed sanjaynagi closed 3 years ago
test set built. Only problem now is that running snakemake in the .test folder means scripts not provided through the "script:" directive are no longer relative to the working directory. this is important for snpEff, which is not yet done through conda due to a db error with current conda version 4.3.1. also with baseParser, a separate rule could be made for this so it can be used as a 'script'
DONE. test data was made by using the X chrom only, and subsampling the bam files. data is stored in .test/