allow fastq files to be specified in units.tsv

sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

https://sanjaynagi.github.io/rna-seq-pop/

MIT License

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Closed sanjaynagi closed 3 years ago

sanjaynagi commented 3 years ago

Make a units.tsv file of 3 columns, sample, read1, read2 which is automatically read into snakemake.

Optionally, allow either rigid (current) or flexible filenaming by using an input function

sanjaynagi commented 3 years ago

This is now working I think although the table feature has not been tested really

sanjaynagi commented 3 years ago

the fastq table has now been tested by @azurillandfriend and seems to be working