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sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
https://sanjaynagi.github.io/rna-seq-pop/
MIT License
18 stars 7 forks source link

expand config.yaml #4

Closed sanjaynagi closed 3 years ago

sanjaynagi commented 3 years ago

This needs to include data such as pointing to gene name info, ploidy, and ideally the option to trim sequences

sanjaynagi commented 3 years ago

It should also optionally point to the IRmutations file. This is the only part of the pipeline which is actually specific at all to resistance, and just useful to our group as a quick look to see what mutations of interest are in the samples.

also

chromosome names? snpEff - database name overall dataset name?

sanjaynagi commented 3 years ago

all complete bar, the option to trim. This will be added but not priority.