Closed sanjaynagi closed 1 year ago
New behaviour in conda 4.6.0 (strict channel priorities) means that a few conda envs that previously worked now do not. And therefore I am having to re-workout the conda envs, mainly pythonGenomics and variants.yaml
In this PR, I have:
Simplified SummaryStats.py, removing all plotting
Removed previous Pi and Theta calculations and replaced with functions in rnaseqpoptools which calculate the statistics in windows and then combine, getting CIs as done in Ag1000g phase 1 and as done in RNA-Seq-Pop ms
removed .travis.yml, as github actions is CI now
Turned GeneFamiliesHeatmap off in .test config, as required files are not present