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sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
https://sanjaynagi.github.io/rna-seq-pop/
MIT License
18 stars 7 forks source link

Allow fastq path in metadata - 15.10.22 #47

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

Removing the use of a separate table to specify the fastq paths, and instead users can have an fq1 and fq2 column in the metadata instead, which simplifies things.

Users may still use automatic fastq paths by using resources/reads and naming fastqs as - {sampleID}_1.fastq.gz , {sampleID}_2.fastq.gz

sanjaynagi commented 1 year ago

Made an error when creating a new branch, did not first switch back to main and now this branch has all the old commits. Closing PR.