Removing the use of a separate table to specify the fastq paths, and instead users can have an fq1 and fq2 column in the metadata instead, which simplifies things.
Users may still use automatic fastq paths by using resources/reads and naming fastqs as - {sampleID}_1.fastq.gz , {sampleID}_2.fastq.gz
Removing the use of a separate table to specify the fastq paths, and instead users can have an fq1 and fq2 column in the metadata instead, which simplifies things.
Users may still use automatic fastq paths by using resources/reads and naming fastqs as - {sampleID}_1.fastq.gz , {sampleID}_2.fastq.gz