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sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
https://sanjaynagi.github.io/rna-seq-pop/
MIT License
18 stars 7 forks source link

implement single-end read functionality #56

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

Currently the workflow can only handle paired-end reads. We can modify this to allow single-end data in common.smk, get_fastqs().

sanjaynagi commented 1 year ago

We also need to then add CI for single-end data