edit scripts to take snakemake params

sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

https://sanjaynagi.github.io/rna-seq-pop/

MIT License

18 stars 7 forks source link

Closed sanjaynagi closed 3 years ago

sanjaynagi commented 3 years ago

edit scripts to take snakemake params directly - aka snakemake@input[1], for R , snakemake.input[0] for python
change rules to 'script' as opposed to 'shell'

sanjaynagi commented 3 years ago

done for python scripts, needs doing for R diff exp

sanjaynagi commented 3 years ago

Done for all, outputs are still currently paths, however.

sanjaynagi commented 3 years ago

Done for all outputs now, except those in loops in which the output name is variable