rule that unzips a .fa.gz ref file

sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

https://sanjaynagi.github.io/rna-seq-pop/

MIT License

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rule that unzips a .fa.gz ref file #68

Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

So that we can gzip the .test/ references and save space, currently the X chrom of gambiae (33mb!). 7mb gzipped.

sanjaynagi commented 1 year ago

completed. a lot of space taken up by the repo is in .git/objects/pack which contains the large files we've stored in git. We need to remove these ideally, but its not easy, as it means editing the whole commit history. Will attempt soon in a PR.