remove cutadapt and add fastp

sanjaynagi / rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

https://sanjaynagi.github.io/rna-seq-pop/

MIT License

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Closed sanjaynagi closed 1 year ago

sanjaynagi commented 1 year ago

In this PR we have removed fastqc and cutadapt, and replace them with fastp.

We have also removed any commented out old rules. Updated the pythonGenomics.yaml to a later python version.

Updated the multiqc wrapper to a later version.