Fine mapping to reproduce COVID19 results

sankaranlab / SCAVENGE

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

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Fine mapping to reproduce COVID19 results #14

Open priyamvadagr opened 1 year ago

priyamvadagr commented 1 year ago

Hi, I am trying to reproduce the fine mapping results for your COVID19 analysis, but I am not able to get the same sentinel SNPs as reported. Would it be possible for you to share the reference panel and script used by you? Thanks

fl-yu commented 1 year ago

Hi We appreciate your interest in our work. Would the following information be beneficial to you? https://github.com/sankaranlab/SCAVENGE-reproducibility/blob/main/data/finemappedtraits_hg19/covid19hg_B1_FMdata.txt

priyamvadagr commented 1 year ago

Hi! Thank you for getting back to me. We want to reproduce these finemapping results and were wondering if you could provide us with details regarding the reference panel used.