The cellhub.tasks.setup class is now used to configure pipeline tasks. See the "writing pipeline tasks" and "cellhub.tasks.setup" docs for more details.
Pipeline tasks have been updated to use the cellhub.tasks.setup.
Also:
Add new pipeline command "profile". After running a pipeline, the resource usage of its tasks can now be summarised with e.g. "cellhub cluster profile".
Switch to the read the docs documentation theme. Note that you will need to "pip install sphinx_rtd_theme" to build the docs.
Also:
Changes have been tested.