Package needs to be loaded explicitly

sanssouci-org / IIDEA

Interactive Inference for Differential Expression Analyses

GNU General Public License v3.0

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Package needs to be loaded explicitly #2

Open pneuvial opened 1 year ago

pneuvial commented 1 year ago

Currently

IIDEA::shinyApp()

will not work if the IIDEA package is not explicitly loaded. That is one needs to do

library("IIDEA")
shinyApp()

The reason is that some of the code is not under R/. And the reason why some of the code is not under R/ is to ease deployment on plmshift.

pneuvial commented 11 months ago

Details: plmshift requires the code of the app to be located in the 'ShinyApp' folder of the repo, which is incompatible with a shiny app within an R package, cf https://mastering-shiny.org/scaling-packaging.html

Possible solutions

write a github action to create/update a branch dedicated to deployment, where the 'ShinyApp' folder constraint is met
change the expectations on the side of plmshift (I've just asked for this)