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santirdnd / COPLA

A taxonomic classifier of plasmids
https://castillo.dicom.unican.es/copla/
GNU General Public License v3.0
25 stars 4 forks source link

Create custom database/add new PTUs? #1

Open samlipworth opened 3 years ago

samlipworth commented 3 years ago

Hi,

Really excited about using this tool - I've tried it on a number of plasmids which don't fall into the shipped PTU classification - is there any way to create ones own database/assign novel PTUs?

Cheers, Sam

santirdnd commented 3 years ago

Hello Sam, sorry for the late reply, I somehow lost the email in the inbox.

Creating custom databases is not implemented. In fact, I hadn't even thought about it. The good news is that we are working on that same code area at the moment (we are updating the current database to RefSeq 200 and trying to automate the whole process), so I will keep in mind exposing this feature.

Cheers, S.

MariaBalbuena commented 2 years ago

Hi,

Returning to the topic. Do you have any option to use a custom database and generate PTUs, with the COPLA architecture?

Best Maria