fastani :: missing dependency

santirdnd / COPLA

A taxonomic classifier of plasmids

https://castillo.dicom.unican.es/copla/

GNU General Public License v3.0

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fastani :: missing dependency #5

Open EricDeveaud opened 3 years ago

EricDeveaud commented 3 years ago

Hello,

fastani is used by copla


get_fastani_identity.sh:conda activate fastani
bin/get_fastani_identity.sh:fastANI -q ${QRYFILE} --rl ${REFLIST} -o ${OUTFILE} --minFraction ${MINFRAC} -t ${THREADS} -k ${KMERLEN} --fragLen ${FRAGLEN} 1>${LOGFILE} 2>&1```

but fastani is not mentionned on dependencies list nor in conda yaml files

regards

Eric