Closed sappelhoff closed 1 year ago
Merging #128 (31afc3b) into master (c6b268b) will decrease coverage by
0.01%
. The diff coverage is100.00%
.
@@ Coverage Diff @@
## master #128 +/- ##
==========================================
- Coverage 99.03% 99.02% -0.02%
==========================================
Files 7 6 -1
Lines 725 717 -8
==========================================
- Hits 718 710 -8
Misses 7 7
Impacted Files | Coverage Δ | |
---|---|---|
pyprep/find_noisy_channels.py | 100.00% <100.00%> (ø) |
|
pyprep/utils.py | 100.00% <100.00%> (ø) |
|
pyprep/__init__.py |
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@sam54000 when you install pyprep from this branch ("data
", https://github.com/sappelhoff/pyprep/tree/data), does this fix your problem?
I installed pyprep from the branch "data" it works.
Also you right it is something to do with the preload: the mne-bids function to read raw doesn't have explicitely the preolad option so I assumed it was taking care of (I tried with the main branch). Then I figured that I have to specificaly pass the option through extra_params
like this: mne_bids.read_raw_bids(bids_path=bids_path, verbose=False,extra_params={'preload' : True})
. So yes if it is faster with ._data we should keep this as it is. Maybe changing the code to throw an error saying that raw needs to be preloaded if ._data doesn't exist?
Thank you very much for your help and sorry for this
Thanks for testing and the additional info! I think I will merge this fix, because the impact on performance is really negligible (the newly introduced get_data will not (!) be called hundreds of times in a loop). if you want to prepare a PR that introduces a check for preload, please be my guest!
PR Description
fixes #127
Not really sure what the problem was over there, but the adjustments here are minor (
get_data()
should yield the same as._data
, except that it takes a tiny bit longer) and it'd fix the issue.Merge Checklist
closes #<issue-number>
to automatically close an issueCITATION.cff
file