sara-javadzadeh / FastViFi

Detect viral infection and integration sites on NGS input. Manuscript is in preparation.
GNU General Public License v3.0
9 stars 2 forks source link

chmod folder access error #5

Open bhagesh-codebeast opened 2 years ago

bhagesh-codebeast commented 2 years ago

Hi, While executing the FastViFi I encountered the following error:

chmod: cannot access '/home/output/tmp': No such file or directory

following is the command I execued:

python3 run_kraken_vifi_docker.py --input-file /mnt/bhagesh/7_fastvifi/FastViFi/input/barcode07/FAP28939_R1.fq \
--input-file-2 /mnt/bhagesh/7_fastvifi/FastViFi/input/barcode07/FAP28939_R2.fq \
--output-dir output \
--virus hpv \
--kraken-db-path /mnt/bhagesh/7_fastvifi/FastViFi/kraken_db/kraken_datasets/ \
--vifi-viral-ref-dir /mnt/bhagesh/7_fastvifi/FastViFi/ViFi/viral_data/hpv/ \
--vifi-human-ref-dir /mnt/bhagesh/7_fastvifi/FastViFi/ref/

Is there a quick fix through the parameters ?

Thank you.