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sarabjotanand / owltools

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x-simple.obo files produced by oort lack escapes #43

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
When making a release with oort,  the *-simple.obo files produced lack escape 
characters found in the original

e.g.

comment: Pre-synaptic terminals were assessed by labelling with a 
UAS-Synaptotagmin reporter (P\{UAS-HA-syt}) [FBtp0015803]. The identification 
of dendrites and axons was done using a UAS-Dscam (P\{UAS-Dscam.exon17.1.GFP}) 
[FBtp0021447] or a UAS-tau (P\{UAS-tau-lacZ.O}) [FBtp0010033] reporter, 
respectively (Morante and Desplan, 2008). Cell connectivity in the lamina was 
determined by analysis of semi-automated EM reconstruction of 749 serial 
sections of 21 complete lamina cartridges. The number of synaptic connections 
for Lawf (presynaptic/postsynaptic) in a single lamina cartridge with each cell 
type was the following: R1 (1/1), R2 (3/-), R3 (1/-), R6 (1/-), L1 (1/-), L2 
(7/-), L3 (17/-), L5 (1/-), Lai (24/-), T1 (1/-), C2 (3/-), C3 (2/-), Lawf 
collaterals (5) and epithelial glia (6/-) (Rivera-Alba et al., 2011).
>
comment: Pre-synaptic terminals were assessed by labelling with a 
UAS-Synaptotagmin reporter (P{UAS-HA-syt}) [FBtp0015803]. The identification of 
dendrites and axons was done using a UAS-Dscam (P{UAS-Dscam.exon17.1.GFP}) 
[FBtp0021447] or a UAS-tau (P{UAS-tau-lacZ.O}) [FBtp0010033] reporter, 
respectively (Morante and Desplan, 2008). Cell connectivity in the lamina was 
determined by analysis of semi-automated EM reconstruction of 749 serial 
sections of 21 complete lamina cartridges. The number of synaptic connections 
for Lawf (presynaptic/postsynaptic) in a single lamina cartridge with each cell 
type was the following: R1 (1/1), R2 (3/-), R3 (1/-), R6 (1/-), L1 (1/-), L2 
(7/-), L3 (17/-), L5 (1/-), Lai (24/-), T1 (1/-), C2 (3/-), C3 (2/-), Lawf 
collaterals (5) and epithelial glia (6/-) (Rivera-Alba et al., 2011).

Original issue reported on code.google.com by dosu...@gmail.com on 20 Dec 2012 at 12:28

GoogleCodeExporter commented 9 years ago 
made a new release of OORT, which includes a fixed OBO format writer

Original comment by HDie...@lbl.gov on 20 Dec 2012 at 4:45