I just started the export of the SNPs in omniex_missense_acmg.txt.
Instead of going through our DB I decided to go back to the raw files as uploaded by people, just to make sure that we're working on unprocessed data. I just took the list of all SNP names and ran
grep -w -F -f snp_names ./data/*23andme* |cut -f 1,4 against the folder full of raw openSNP uploads.
The list is being compiled right now and I'll push the file here once it's done.
I just started the export of the SNPs in
omniex_missense_acmg.txt.Instead of going through our DB I decided to go back to the raw files as uploaded by people, just to make sure that we're working on unprocessed data. I just took the list of all SNP names and ran
grep -w -F -f snp_names ./data/*23andme* |cut -f 1,4against the folder full of raw openSNP uploads.The list is being compiled right now and I'll push the file here once it's done.