search

sarahet / RLM

Read level DNA methylation analysis of bisulfite converted sequencing data
BSD 3-Clause "New" or "Revised" License
18 stars 3 forks source link

Error: unexpected string constant when running "summarize_read_level_stats.Rmd" #3

Closed jaroslavj closed 10 months ago

jaroslavj commented 1 year ago

Could you please advise how to fix following error? Thank you!

Rscript -e "rmarkdown::render('summarize_read_level_stats.Rmd',

  • params=list(
  • single_read_input_file = '../single_read/OP1309G_single_read.bed',
  • pdr_input_file = '../pdr/OP1309G_pdr.bed',
  • entropy_input_file = '../entropy/OP1309G_entropy.bed',
  • sample_name = 'OP1309G'),
  • output_file = 'OP1309G.pdf')" Error: unexpected string constant in: "sample_name = 'OP1309G'), output_file = 'OP1309G.pdf')""
sarahet commented 1 year ago

Hi - so far I cannot reproduce this. Could you paste this again in the code mode here, maybe I am missing something because of the formatting. Is this the whole error message or is there more output before the "Error: unexpected string constant in ..."?

sarahet commented 10 months ago

Closing this due to inactivity.