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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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Sublineage of #791 (HK.3.1) with S:681R (20 seqs, Sweden) #1028

Closed xz-keg closed 11 months ago

xz-keg commented 1 year ago

HK.3.1+A29700G+T11269C+G29081T(N:T270I)+G410T(Orf1a:G49C)+G8849A,A23604G(Orf1a:V2862M,S:H681R)

GISAID query: G8849A,C23604G,T11269C No. of seqs: 19(Sweden)

First: EPI_ISL_18443363, 2023-10-5 Latest: EPI_ISL_18443381, 2023-10-19

usher

Usher places some of the seqs at earlier stages because they have their 410 and 29081 masked. All seqs shall be actually having 29081T and 410T.

image

Fearuncle commented 1 year ago

descendent of https://github.com/sars-cov-2-variants/lineage-proposals/issues/791

FedeGueli commented 1 year ago

thank you very likely a long term care outbreak judging by ages, but it could spread further outside.