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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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XBB.1.16.2/JN.1 recombinant, 14 seqs, Australia, USA, New Zealand, Canada #1090

Closed JosetteSchoenma closed 6 months ago

JosetteSchoenma commented 1 year ago

Description: XBB.1.16.2/JN.1 recombinant, 1 breaking point, Spike from JN.1 Private mutations: C583T, C12970T, G25252T from XBB.1.16.2: A5350G, A5689G, T8014G, G8872A from JN.1: C11747T, T21610C Breakpoint: between nucleotide 8872 and 11042 One sequence from: 2023-10-30 from NSW, Australia Countries circulating: Australia GISAID query: T8014G, G8872A, G11042T (edited om 02/21) Sample: EPI_ISL_18513949 Nextclade: image

image

FedeGueli commented 1 year ago

Sorry i ve missed the proposal thank you @JosetteSchoenma

Over-There-Is commented 12 months ago

T21610C = Artefact

FedeGueli commented 10 months ago

No new sample of this one for now. Closing it.

xz-keg commented 10 months ago

+1 Queensland

xz-keg commented 10 months ago

+1 Australia NSW

xz-keg commented 10 months ago

+1 VIC

xz-keg commented 10 months ago

+2 Australia. The query now captures an unrelated USA sample, suggest to change.

FedeGueli commented 9 months ago

+2 Australia. The query now captures an unrelated USA sample, suggest to change.

yeah 8 with the old query trying to find a new one.

FedeGueli commented 9 months ago

new query :G11042T,C583T,-A29086T,-T17065C,G8872A

FedeGueli commented 9 months ago

7 with G11042T,C583T,-A29086T,-T17065C,G8872A

xz-keg commented 9 months ago

+1 USA

JosetteSchoenma commented 9 months ago

+1 Queensland

Query: T8014G, G8872A, G11042T

All are being called XDK by Nextclade!

JosetteSchoenma commented 8 months ago

+1 New Zealand

JosetteSchoenma commented 8 months ago

+1 (Western) Australia

JosetteSchoenma commented 8 months ago

+1 Queensland, Australia

xz-keg commented 7 months ago

+1 with S:T573I

xz-keg commented 7 months ago

+1 Canada

xz-keg commented 6 months ago

Seems dead.