Multiple JN.1 sequences with S:T572I : 74 Branches as Apr 28

[FedeGueli]

Branch 1 > Now designated JN.1.7

France Count: 439 now proposed in https://github.com/cov-lineages/pango-designation/issues/2428 JN.1 > C25566T > S:T572I (C23277T),S:E1150D (G25012T) Query : A7842G, G25012T, C25566T,C23277T

Branch 2 > France Count:76 Slow JN.1 > T26511C > S:T572I (C23277T) Note that 3 out of 4 have also S:N657D Query: A7842G, T26511C,C23277T

Branch 3 > designated JN.1.8.1

Count: 458 JN.1> > Orf7a:T28I (C27476T)> A12928G > S:T572I (C23277T) C27476T,C23277T,A12928G

Branch 4 dead

Portugal/Switzerland/Emirates Count: 12 /dead JN.1.1> ORF1b:A520V (C15026T)> S:T572I (C23277T) Query: C15026T,A7842G,C23277T,C1762A

Branch 5 >Count 358 designated JN.1.1.1

JN.1.1 > C11747T > C9142T > S:T572I (C23277T) C23277T,C1762A,C9142T

Branch 6 > Count 25 Canada sublineage of JN.1.2 / DUPLICATE of Branch 13 keeping the other open

Branch 7 Dead

Count 64 Canada (Mini saltation)
JN.1.45 (G18756T) > S:D1259Y (G25337T) > ORF1a:S1510F (C4794T), A13288G, S:H49Y (C21707T), S:T572I (C23277T) , C25413T, C26873T Query: C25413T, C26873T,A13288G

Branch 8 > designated JN.1.4.3

Count 44 Austria / now proposed in https://github.com/cov-lineages/pango-designation/issues/2487 JN.1.4 > S:T572I (C23277T) Query : C774T,C23277T,-T18453C,-G27706T ,C18894T,-C3177T,-C26111T,-C25465T,-T911A then acquired S:R346T

Branch 9 > dead

count 6 Austria /dead JN.1.1 > C11747T > S:S254F (C22323T) > C9142T > Orf1a:T2283I (C7113T), C8419T, S:T572I (C23277T) Query: C7113T, C23277T,C8419T

Branch 10 > Dead

count 2 Italy /dead JN.1.1 > C11747T >C9142T,T8677C, C24337T > S:T572I (C23277T) Query : T8677C,C24337T,C23277T

Branch 11 Dead

count 4 Scotland / Dead JN.1.4 > Orf7a:A105S (G27706T) > C4327T, T20217C, C21216A > S:T572I (C23277T) Query: T20217C ,C23277T,G27706T

Branch 12 Dead

count 40 England/Denmark
JN.1.4 > T18453C >Orf1a:V274L (G1085T), G29260T > Orf1b:R340S (A14487T),S:T572I (C23277T) Query: G1085T, ,A14487T , C23277T

Branch 13 Slow

count 54 Canada/Uk JN.1.2 > Orf1b:T2488M (C20930T) > S:t572I (C23277T) Query: C20930T,C23277T,G25249T

Branch 14 proposed in https://github.com/cov-lineages/pango-designation/issues/2461

count 127 Uk / growing
JN.1 >> Orf3a:L85F (G25647T) > A5053G, T23629C > ORF1a:T2152I (C6720T)> S:T572I (C23277T) Query: C23277T, A5053G ,C6720T

Branch 15 > Designated KW.1

count 122 , proposed by @Fearuncle in #1244/ https://github.com/cov-lineages/pango-designation/issues/2513 Growing Defining JN.1.28 (C24034T > A29700G) > C19545T, C24370T > Orf1a:P1640L (C5184T) > T10084A ,S:T572I (C23277T) Query:C19545T, C24370T ,C5184T,C23277T

Branch 16 > Dead

count 2 France /Dead Defining JN.1.1>C11747T > C280T > Orf1b:T1646I (C18404T), S:T572I (C23277T) Query: C280T ,C18404T,C23277T

Branch 17 count 53 (always check) France, England, South Australia Defining JN.1.1 > C11747T > S:T572I (C23277T) Query: C1762A,C23277T,C11747T,-C9142T,-C280T,-C5314T,-C4093T,-A4912G,-C1218T,-G1820A,-A6588G,-C16650T, Now it got a branch with S:R346T Query: C11747T ,C23277T ,G22599C ,T3565C (19)

Branch 18 > Designated KV.2

count 206 Texas /Growing
Defining JN.1.4.5 (T18453C > Orf8:S103L=C28201T) > Orf1a:P971L (C3177T), C11956T, S:T572I (C23277T) Query: C28201T,C3177T, C11956T,

Branch 19 designated JN.1.4.6

count 107 now proposed in https://github.com/cov-lineages/pango-designation/issues/2504 Defining JN.1.4 > T18453C >S:T572I (C23277T)
Query: C23277T,T18453C,C774T,-G3085T,-G3085T,-T1483C,-C4795T,-T9769C,-C401T,-C29311T,-T18471C,-C2232T,-C25465T,-C1288T,-C3177T,-G910A,-C1762A,-G7393A,-C10748A,-C6781T,-A14487T,-C28201T,-G2202T

Branch 20 now proposed in https://github.com/cov-lineages/pango-designation/issues/2512

count 90 Canada, NY / Growing Defining JN.1.4 > T18453C > G910A, Orf1a:S216N (T911A, C912A), C8668T, S:T572I (C23277T),
Query: T18453C, C8668T,G910A,C23277T

Branch 21 count 5 Denmark Dead

JN.1.4 > T18453C > S:T572I (C23277T), Orf3a:P25S (C25465T) , C27131T Query: C23277T, C25465T, C27131T

Branch 22 > count 8 USA Nevada dead

JN.1.19 [ C1060T > Orf8:I71V (A28104G)]> C23575T > C5986T > S:T572I (C23277T),N:P67S (C28472T) Query: A28104G,C23575T, C5986T ,C28472T

Branch 23 Dead

count 6 ( England) Mini Saltation
JN.1 > G17562T > C3784T, Orf1b:H1550Y (C18115T), S:G446I (G22899T),S:T572I (C23277T), Orf10:R24C (C29627T) Query: G17562T , C3784T, C18115T

Branch 24 > Dead

count 3 Scotland dead JN.1 > T2236C > Orf8:G66C (G28089T) > T14865C S:T572I (C23277T),
Query: T14865C,C23277T,G28089T

Branch 25 > Dead

count 8 England, California / dead JN.1 > C23896G > C186T >C10165T , C12073T, Orf1b:I2568M (A21171G), S:t572I (C23277T) Query: C10165T, A21171G,C12073T

Branch 26 > Designated JN.1.47.2

JN.1 > C8074T > C7594T > Orf1a:H374Y (C1385T) > S:T572I (C23277T) S:R683Q (G23610A) Query: C1385T,C23277T,G23610A

Branch 27 > Designated JN.1.9.1

count : 22 JN.1.9 (S:Q183H) > Orf1a:A3143V (C9693T) > S:T572I (C23277T) Query: C9693T, C897A, C23277T

Branch 28 Dead

count 3 Denmark mini saltation dead JN.1> G8578A > C26499G > C24382T > Orf1a:R542H (G1890A), Orf1a:Q3346K (C10301A), S:S151I (G22014T),S:t572I (C23277T), T29515C, N:S416L (C29520T) Query : G1890A ,C10301A

Branch 29 Dead

count 13 US (Modified: there is more than one branch with A13308G) JN.1 > Orf1a:K4348R (A13308G) > Orf1a:W646L (G2202T) > S:T572I (C23277T) Query: A13308G, C774T,T18453C,C23277T,G2202T

Branch 30 Dead

count 23 Spain
JN.1.31 (Orf3a:V13L )(G25429T) > C19186T > C18687T > C14403T, S:T572I (C23277T) Query: C14403T, C23277T, G25429T

Branch 31 > dead

Count 2 Singapore dead JN.1.5> C5986T> S:T572I (C23277T) Query: C5986T,C23277T,G17278A

Branch 32 now it is under JN.1.4.3

Count 103 US (To be proposed ?) JN.1.4 > Orf9b:S50L ( C28432T )> S:T572I (C23277T) Query: C28432T,C23277T, C774T

Branch 33 Dead

Count 25 France, US
JN.1.4.7 [ Orf3a:G18D (G25445A)] > S:T572I (C23277T) Query: G25445A,C23277T,C774T

Branch 34 > Count 5 Germany Us UK dead

JN.1.4 > G7393A > C18888T, S:T676N (C23589A) > S:T572I (C23277T) Noted that further acquired Orf10:S23F (Recomb?) Query: C18888T, C23589A ,C23277T

Branch 35 Dead

count 1 Arizona JN.1.4 > S:R346T (G22599C) > C4084T, C12754T, C26885T > C29635T > C2980T, S:T572I (C23277T), Orf7a:V71L (G27604T) Query: C2980T,G27604T,C4084T

Branch 36 dead

count 7 Italy dead JN.1> C1060T > T9124C, T16605C, S:T572I (C23277T), A24727G Query: T9124C, T16605C

Branch 37 > 22 US
JN.1.4.5 ( T18453C+Orf8:S103L=C28201T)> C11653T > S:T572I ( C23277T) Query: C28201T, C11653T , C23277T

Branch 38 Dead

3 Singapore dead JN.1.4.5 ( T18453C,Orf8:S103L =C28201T)> C28948T > C10138T > S:T572I (( C23277T) then Orf1b:K2557R Query: C28948T ,C10138T ,C23277T

Branch 39 > count: 13 (US)
JN.1 > G17562T, C27563T > C27595T > Orf1a:S2242F (C6990T) > S:T572I (C23277T) Query: C6990T,C27595T, C23277T

Branch 40 dead

7 UK slow JN.1 >> G17562T > T13737C, S:T572I (C23277T), Orf3a:C200G (T25990G) Query: T13737C, T25990G

Branch 41 Dead

4 US slow JN.1.4 > C1288T > C2942T > S:T572I (C23277T) Query: C1288T, C2942T ,C23277T

Branch 42

11 UK dead JN.1.19 > Orf1a:N2065S (A6459G) > S:T572I (C23277T) , C23758T, C25521T, Orf3a:T229I (C26078T) Query: A6459G, C23758T, C25521T

Branch 43: > 4 US Dead

JN.1 > C17676T > S:R683Q (G23610A) > S:T572I (C23277T) Query: C17676T,G23610A,C23277T

Branch 44 DEAD

3 Uk dead JN.1 > S:R683Q (G23610A) > C10747T, Orf1b:A1369V (C17573T), S:T572I (C23277T) ,Orf7a:P34L (C27494T) Query: C10747T, C17573T,C23277T Note that it is misplaced in the same tree of branch 43.

Branch 45 now proposed in https://github.com/cov-lineages/pango-designation/issues/2540

37 Uk fast JN.1.4> > T18453C > N:A35T( G28376A) > C23929T > C6781T, S:K150R (A22011G), S:T572I (C23277T) Query: C23929T, C6781T,A22011G or C6781T,A22011G

Branch 46 Dead

10 (US:Tx,NY) JN.1 > C26894T > C25680T > A28699T > S:T572I (C23277T) Query: C26894T , C25680T, A28699T ,C23277T

Branch 47 > 19 (Can,Us) JN.1 > A18093G > S:T572I (C23277T) Query: A18093G ,C23277T,T3565C

Branch 48 dead

13 (Can Us)
JN.1 > T772C > A8122G > [Orf1b:T1555I (C18131T) then reverted]> C20178T, S:T572I (C23277T), C27804T,T28924A Query: C20178T, C23277T, C27804T,A8122G

Branch 49 > 20 Chile ( Spotted by @aviczhl2 ) JN.1.21 (S:H1058Y) > Orf1b:K2358R (A20540G) > S:T572I (C23277T) Query: A20540G,C23277T

Branch 50 Dead

4 US JN.1.4 > Orf1a:Q575H (G1990T)> Orf1a:T1437I (C4575T) > S:T572I (C23277T) ,N:P383L (C29421T) Query: G1990T,C4575T,C23277T

Branch 51 > 28 South Korea JN.1.1> > C11747T > T16461C > A4912G > S:T572I (C23277T) Query: C11747T , T16461C , A4912G ,C23277T

Branch 52 Dead

2 Canada Jn.1.1 >> C11747T > C280T > Orf1b:L1551I (C18118A) > C11704T > S:H207Q (C22183A), S:T572I (C23277T), G28079T Query: C22183A, C23277T, G28079T

Branch 53 > 9 Wales Slow JN.1 > Orf1a:I2903M (A8974G )> Orf1a:W630C (G2155T) > Orf1b:H2010Y (C19495T), S:T572I (C23277T) Query: G2155T,C19495T,C23277T

Branch 54 > 34 US JN.1>C1060T > C9166T > Orf1a:T2166N (C6762A) > S:T572I (C23277T) Query: C9166T ,C6762A,C23277T,T3565C

Branch 55 > 22 Austria,Spain JN.1> Orf3a:D199H (G25987C) > S:T572I (C23277T)> T14179C,C25710T Orf3a:D199H reverted then Query: T14179C,C25710T

Branch 56 > 13 Hubei JN.1 > Orf1a:G400S (G1463A) > C3817T > A19314G > A29538G > Orf1a:P959S (C3140T), S:T572I (C23277T) Query: A19314G ,C3140T,C3817T

Branch 57 Dead

4 France,Texas,Germany JN.1 > Orf1a:D75Y (G488T) > S:T572I (C23277T ) Query: G488T , C23277T,T3565C (finds only 3 )

Branch 58 Australia spotted and proposed by @aviczhl2 in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1473

JN.1 >JN.1 >C9996T(Orf1a:S3244L)> C21766T, G22343C(S:G261R) >Orf1a:R2860S (A8845C),S:T572I(C23277T ) Query:C23277T, G22343C,A21766T Samples : 13

Branch 59 Designated KP.1.2 spotted by @aviczhl2 KP.1 >C5884T, T10636G, S:T572I (C23277T), G24193C, C29218T Query: A24819G,C23277T,T3565C new query ( old query: C5884T, T10636G) Samples: 4 US There is another sample clustering with this without the silent mutations but with S:S:680P and S:K1245R

Branch 60 found using @aviczhl2 's tool #1484 JN.1.4> > T18453C > Orf1a:K4348K (A13308G)> Orf1b:P1223T (C17134A) > S:T572I ( C23277T) Query: C17134A,C23277T,A13308G Samples : 6 (South Korea)

Branch 61 dead

found by @aviczhl2 and proposed in #1485 JN.1.1> T18173C(Orf1b:I1569T)>C16650T> S:K444R (A22893G)> S:T572I (C23277T) Query: T18173C,C16650T,A22893G,C23277T Samples: 4

Branch 62 combo dead

JN.1.11.1 > C6070T > C10969T, S:T572I (C23277T) ,A26579G Query: C6070T,C10969T, A26579G Samples: 3 Uk Israel

Branch 63 Designated KP.5 Now proposed in https://github.com/cov-lineages/pango-designation/issues/2568

COMBO JN.1.11.1 >S:T572I (C23277T) Query:C7113T,C23277T,T3565C, G24872T,-G9010A,-C6070T,-A24819G,T22928C Samples: 15

Now TRIO Branch: JN.1.11.1 >S:T572I (C23277T) > C3811T > C2197T, C9857T, S:R346T (G22599C) ,A23080G Query:C3811T , C2197T, C9857T,T3565C Samples: 4 (US)

Branch 64 Dead

JN.1 > C23086T >C4921A, C10726T, T17262C,S:T572I (C23277T), Orf3a:I37T (T25502C), C29272T Query: C4921A, C10726T, T17262C Samples: 5 UK

Branch 65 Dead

JN.1.19 (Orf8:I71V,C1060T) > Orf1a:N2065 (A6459G)> Orf1a:E87D(G526T)> C5806T, C19380T, S:T572I (C23277T), REV. S:N679N (C23599C) Query:C5806T, C19380T, C23277T Samples: 3 England

Branch 66 found by @aviczhl2 in #1513 JN.1 > Orf1a:K4483R (A13712G) > Orf1a:A2529S (G7850T) > Orf1a:D1513E (T4804G) >S:T572I (C23277T) Orf3a:S92L (C25667T), T26047C, C28115T Query: C25667T, T26047C, C28115T Samples : 35 Australia

Branch 67 dead

found by @aviczhl2 .1 > Orf1a:A2097V (C6555T)> T22555C > N:M210T (T28902C)>T16731C > Orf3a:Y107C (A25712G) > Orf1a:L204F (C875T), Orf1a:T2166I (C6762T), S:H146Y (C21998T), S:T572I (C23277T), Orf3a:T175I (C25916T) Query: C875T,C6762T,T3565C Samples: 4 ITALY

Branch 68 proposed by @aviczhl2 in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1501

JN.1> JN.1+C16323T> (Orf8:E19* (G27948T), Orf9b:A22V (C28348T) > S:T572I (C23277T) Query: G27948T, C28348T, C23277T Samples: 7

Branch 69: spotted and proposed by @aviczhl2 in #1518

JN.1.18+G25606A(Orf3a:A72T)+A13288G+A28834G+A3558G,C15933T, A25359G(Orf1a:K1098R,S:K1266R)+C23277T, G26367T, C28651T, C29555T(S:T572I) Query: C23277T,A25359G, A13288G Samples:7

branch 70: dead

Ex singlet 2 AUS QLD mini saltation JN.1 WITH S:S31F S:Q1180K N:H300Y Query: T11737C, C21654T, C23277T, C28603T Samples: 2

Branch 71 : proposed in https://github.com/cov-lineages/pango-designation/issues/2564

JN.1 > C6896T > A19578G > S:T572I (C23277T) Query: C6896T , A19578G , C23277T, T3565C Samples: 77 Australia, New Zealand Canada

Branch 72: spotted by @aviczhl2 and proposed in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1522

XDQ.1+A18184G(Orf1b:M1573V)+C3885T, A12709G, A26594T, C20320T, C20719T, C23277T, G29254A(Orf1a:P1207L, Orf1b:H2285Y, S:T572I) query: C23277T, A18184G, C28846T Seqs: 5(Japan)

Branch 73 spotted and proposed by @aviczhl2 in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1518

JN.1.18+G25606A(Orf3a:A72T)+A13288G+A28834G+A3558G,C15933T, A25359G(Orf1a:K1098R,S:K1266R)+C23277T, G26367T, C28651T, C29555T(S:T572I) GISAID query for S:T572I branch: C23277T,A25359G, A13288G (7 seqs)

Branch 74 spotted by @DoropFan JN.1>T18471C>C7732T>C20436T>C23277T Query: C7732T, C20436T, C23277T,T3565C Samples: 15

Singlets: 1) Fujan query: C6385T, A16339G, C28313T 2) Moved to Br.70

AUS QLD mini saltation Query: T11737C, C21654T, C23277T, C28603T WITH S:S31F S:Q1180K N:H300Y 3) moved to branch 62 JN.1.11.1 ( combo) + Orf1a:C667Y, Orf1a:G1073V +S:T572I Query: G174T, G2265A, G3483T

Query for all JN.1 + 572I = C18894T, T15756A, -C6541T,C23277T > 5209

[xz-keg]

Branch 5 is 5 now, plus 1 recomb with XBB* that cause it to lose C1762A

[FedeGueli]

Thank you @aviczhl2

[Fearuncle]

issue #987 got S:T572I

[FedeGueli]

Branch 5 went to 10 (ping @corneliusroemer ) branch 3 went to 4

[xz-keg]

Oh, the recomb of branch 5 and XBB goes to 2.

[FedeGueli]

Oh, the recomb of branch 5 and XBB goes to 2.

Propose it in a separate issue

[xz-keg]

Branch 5 +3 Sweden, 13 now

[FedeGueli]

ping @corneliusroemer i suggest direct designation of branch 5.

[FedeGueli]

thx @aviczhl2

[xz-keg]

Branch 5 is 24 now.

1->5->24 in the last 2 weeks.

[FedeGueli]

Branch 5 is 24 now.

1->5->24 in the last 2 weeks.

@corneliusroemer please designate it(branch 5) clearly up quickly

[Memorablea]

https://github.com/cov-lineages/pango-designation/commit/10d1bb4c6e5a1cce9197d57112529617b412b2aa

[FedeGueli]

thx @Memorablea Branch 5 now designated JN.1.1.1 via https://github.com/cov-lineages/pango-designation/commit/10d1bb4c6e5a1cce9197d57112529617b412b2aa

[FedeGueli]

branch 1: +1 Branch 2 : +2

[FedeGueli]

Branch +1 >> 4 Branch +4 >> 8

ping @corneliusroemer also Branch 3 seems quite fast.

[FedeGueli]

Branch 3 at 10 (+2)

[FedeGueli]

Branch 4 : +1 Switzerland

[FedeGueli]

branch 2 went to 4 all french samles. Note that 3 out of 4 have S:N657D

[FedeGueli]

Added branch 7 mini saltation with 49Y,572I,1259Y

[FedeGueli]

Added branch 8 from Austria from orf1a:T170I branch with 3

[FedeGueli]

Branch 1 to 5 Branch 3 to 12

[krosa1910]

There is this mini thing https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice47_genome_fe89_2b830.json?f_userOrOld=uploaded%20sample&gt=S.572I

Search:C23277T, C29762T,A23531G three of them in France.

[FedeGueli]

Branch 1 > +2 Netherlands Branch 4 > +1 Belgium (three countries) Branch 6 > +1

[FedeGueli]

There is this mini thing https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice47_genome_fe89_2b830.json?f_userOrOld=uploaded%20sample&gt=S.572I Search:C23277T, C29762T,A23531G three of them in France.

Thx it is branch 2

[FedeGueli]

Branch 1 > +1 Branch 3 > +5 Branch 8 > +1

[FedeGueli]

@corneliusroemer branch 3 worth getting designated.

[FedeGueli]

Added branch 9 from Austria 2 seqs Added branch 10 from Italy 2 seqs

[xz-keg]

Branch 2 +11 all having S:E657D

[FedeGueli]

B1 > 18 B2 > 15 B3> 32

@corneliusroemer Branch 1 Branch 2 and Branch 3 all worth a designation in my view . If you want to act prudentially start with Branch 3.

[FedeGueli]

B1> 29 B3> 45 B9 > 4

@corneliusroemer :i ve just proposed Branch 1 in https://github.com/cov-lineages/pango-designation/issues/2428

and

Branch 3 in https://github.com/cov-lineages/pango-designation/issues/2429

[FedeGueli]

Added Branch 11 Scotland (4 seqs)

[FedeGueli]

B2 > 16 B7 > 3 B9 > 6

[FedeGueli]

Branch 12 added with 3 sequences Uk/Den

[FedeGueli]

Branch 13 added JN.1.2 from Canada w 3 seqs

[FedeGueli]

Added Branch 14 from Uk 13 sequences, recent lineage.

[FedeGueli]

Added Branch 15 from #1244

[FedeGueli]

Added Branch 16 and 17 Orf1a:T170I new branches from Branch 18 to 20 Uploaded branch 21 22 23(mini saltation)

[FedeGueli]

added branch 24 25 26

[FedeGueli]

added branch 27 that is a sublineage of https://github.com/cov-lineages/pango-designation/issues/2410

[FedeGueli]

Added branch 28 mini saltation from Denmark

[FedeGueli]

Branch 3 designated JN.1.8.1 via https://github.com/cov-lineages/pango-designation/commit/ede4d8fb6fbb5666ede586808e3783294eb675ea

[FedeGueli]

Branch 1 designated JN.1.7 via https://github.com/cov-lineages/pango-designation/commit/d86f724c7fb8b16b42cd91033e7cb64ac1563883

[BorisUitham]

A few parents up from branch 7 there is also 1259y 572s in canada, 4 seqs. Don't know if this issue is fit for also tracking other 572 mutations or if it should go somewhere seperately? It seems to me that S2 mutations and the mutations at 572 occur together

[FedeGueli]

A few parents up from branch 7 there is also 1259y 572s in canada, 4 seqs. Don't know if this issue is fit for also tracking other 572 mutations or if it should go somewhere seperately? It seems to me that S2 mutations and the mutations at 572 occur together

Thank you! i noticed S:T572S weeks ago too but lost track of it then, please propose it separately

[FedeGueli]

@corneliusroemer updated as today i ve flagged growing or slow branches to simplify our work

[FedeGueli]

Branch 14 proposed in # 2461 of Pango repo

[BorisUitham]

Branch 1 (JN.1.7) has a cluster of 7 s:q613h in washington, USA (identical nucleotides). Haven't seen q613h much in ba.2.86 but since branch 1 is relatively quick it's good to monitor, if sequences pop up elsewhere. If they do I will make an issue, for now I think this comment will suffice. Of course q613h was slightly advantageous in first half 2023, but lost its advantage in latter half so it might not do much

[FedeGueli]

Branch 1 (JN.1.7) has a cluster of 7 s:q613h in washington, USA (identical nucleotides). Haven't seen q613h much in ba.2.86 but since branch 1 is relatively quick it's good to monitor, if sequences pop up elsewhere. If they do I will make an issue, for now I think this comment will suffice. Of course q613h was slightly advantageous in first half 2023, but lost its advantage in latter half so it might not do much

i would propose it in this repo if i was me

[BorisUitham]

Branch 1 (JN.1.7) has a cluster of 7 s:q613h in washington, USA (identical nucleotides). Haven't seen q613h much in ba.2.86 but since branch 1 is relatively quick it's good to monitor, if sequences pop up elsewhere. If they do I will make an issue, for now I think this comment will suffice. Of course q613h was slightly advantageous in first half 2023, but lost its advantage in latter half so it might not do much

i would propose it in this repo if i was me

Alright, I will make an issue then

[FedeGueli]

Added branch 29