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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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EG.6.1/JG.3 recombinant(15 seqs, 3 countries) #1105

Closed xz-keg closed 10 months ago

xz-keg commented 11 months ago

JG.3+C1314T,C1684T,T1889C(rev),T2334C(rev),C4012T,A27983G,T29625C(rev)

Orf1a: T350I, C542R(rev), V690A(rev) Orf10: F23S(rev)

EG.6.1--JG.3--EG.6.1

Breakpoint 1 between 2335 and 3240 Breakpoint 2 between 29544 and 29624

C1314T,C1684T,T1889C(rev),T2334C(rev), T29625C(rev) from EG.6.1 branch C4012T, A27983G are private

GISAID query: C1314T, A27983G No. of seqs: 14(Italy 11 Belgium 1 Denmark 2)

First: EPI_ISL_18442788, Denmark, 2023-10-16 Latest: EPI_ISL_18526663, Italy, 2023-11-3

usher image

usher for EG.6.1 donor

image

FedeGueli commented 11 months ago

Emilia Romagna sometimes does targeted sequencing lets see if it goes outside the original cluster.

xz-keg commented 11 months ago

Emilia Romagna sometimes does targeted sequencing lets see if it goes outside the original cluster.

Yeah but it's already in Denmark and Belgium before the Italian outbreak.

FedeGueli commented 11 months ago

likley it was a cluster. let it open for a while before the big closing day after JN.1 turned dominant.

xz-keg commented 11 months ago

+1 Italy from another city

xz-keg commented 10 months ago

No seqs for a long time.