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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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GW.5.3.1/FY.5.1.1 recombinant [8 seqs, Sweden/England] #1140

Closed corneliusroemer closed 8 months ago

corneliusroemer commented 10 months ago

Breakpoint probably around 7k or so, would be great if someone could take a closer look.

image 
hCoV-19/England/CLIMB-CM7YRE5E/2023|EPI_ISL_18497419|2023-11-02
hCoV-19/England/CLIMB-CM7YE5ID/2023|EPI_ISL_18521509|2023-11-07
hCoV-19/Sweden/D-6381377976/2023|EPI_ISL_18538194|2023-11-08
hCoV-19/Sweden/D-6534726776/2023|EPI_ISL_18538193|2023-11-08
hCoV-19/Sweden/AB-01_SE100_23CS502989/2023|EPI_ISL_18507429|2023-11-04

EDITED:

Query: A2345G, C6501A,G13313A Samples: EPI_ISL_18497419, EPI_ISL_18507429, EPI_ISL_18521509, EPI_ISL_18538193-18538194 Countries: Sweden , Uk

Breakpoints 5'-10041 GW.5.3.1 10042-3' FY.5.1 see : covspectrum Schermata 2023-12-03 alle 09 47 47

Spike from FY.5.1

corneliusroemer commented 10 months ago
image image

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_16f54_b28790.json?branchLabel=Spike%20mutations&c=gt-nuc_6019,23277&gmax=24277&gmin=5019

FedeGueli commented 10 months ago

the 357I branch was spotted by @hynnspylor too, it seems stale now, i dont remember if we recognized it as recombinant or not.

FedeGueli commented 10 months ago

@corneliusroemer analysis done in the main proposal.

FedeGueli commented 9 months ago

8 now last two sequences from Upsala and Stockholm

FedeGueli commented 9 months ago

still 8 liley it is slow or dying off.

FedeGueli commented 8 months ago

Likely dead closing it now