JN.1.1+S:S31F(48 seqs, 14 countries)

[xz-keg]

It seems that S:S31F is also convergent in BA.2.86*. Besides JN.2.1 there's also some JN.1.1 branchs with this.

JN.1.1+C21654T(S:S31F)

GISAID query: C21654T,C11747T,C1762A,-9142,-19011,-14070, No. of seqs: 4(USA 2 Singapore 1(from China) South Korea 1)

First: EPI_ISL_18445258, 2023-10-23, Singapore from China Latest: EPI_ISL_18592913, 2023-11-17, USA

usher

[FedeGueli]

Thx i was looking at that too!

[FedeGueli]

It is interesting cause if you make the sum of the mutations deletions and the insertion in that region the 1-100AA of the NTD of BA.2.86 are very far away from the WT, so it makes sense some new mutations could be selected there

[FedeGueli]

+1 France

[xz-keg]

+1 Switzerland

[xz-keg]

+1 UK

[FedeGueli]

it seems slower than parental.

[xz-keg]

13, Israel, Canada

[xz-keg]

16, India/

[xz-keg]

22, Austria, Spain

[xz-keg]

25, Dominician Republic

[FedeGueli]

+1 Spain

[xz-keg]

+1 Australia

[FedeGueli]

44 apparently (didnt check if new ones are in the same tree)

[FedeGueli]

Propose it

[xz-keg]

There seems to be one S:R346T sub-branch under this branch. Don't know the order.

[FedeGueli]

There seems to be one S:R346T sub-branch under this branch. Don't know the order.

Thank you checking it now

[FedeGueli]

There seems to be one S:R346T sub-branch under this branch. Don't know the order.

Ok now it is branch 40 (9 samples mainly India) , please add the 346T when proposing it on the main page, i will keep track of it in the multiple lin issue. thank you !

[FedeGueli]

JN.1.1.7 via https://github.com/cov-lineages/pango-designation/commit/e312db588d211527e101812a04f602fb6874e2fd