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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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Another JN.1.1+S:F456L(7 seqs, 4 countries) #1249

Closed xz-keg closed 8 months ago

xz-keg commented 10 months ago

It seems S:F456L is one of the convergent sites for JN.1.1. We have one XDK+F456L as well as two JN.1.1+S:F456L branches.

JN.1.1+C9142T+T22928C(S:F456L)

GISAID query: C9142T,T22928C,T22926C,C1762A,-5031,-22599 No. of seqs: 3(France 2 Brazil 1)

First: EPI_ISL_18676454, France, 2023-11-20 Latest: EPI_ISL_18710242, Brazil, 2023-12-5

usher

image

xz-keg commented 10 months ago

+1 Singapore from Malaysia

xz-keg commented 10 months ago

+1 USA, that one actually belongs to another branch, edit query.

xz-keg commented 10 months ago

Orf1a:E4388K can be illumina induced artefact, change query.

xz-keg commented 9 months ago

Change query to exclude seqs from S:R346T branch

xz-keg commented 8 months ago

No new seqs